Wall clock time and date at job start Mon Mar 30 2020 02:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 114.00071 * 2 1 4 4 C 1.53002 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46497 * 55.00223 * 4 3 2 6 6 C 1.52997 * 109.47143 * 294.99993 * 4 3 2 7 7 C 1.52999 * 109.46991 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.46626 * 60.00378 * 7 6 4 9 9 C 1.52997 * 109.47127 * 299.99539 * 8 7 6 10 10 H 1.08996 * 109.46952 * 300.00302 * 9 8 7 11 11 C 1.50696 * 109.47055 * 180.02562 * 9 8 7 12 12 H 1.08008 * 119.99563 * 240.00299 * 11 9 8 13 13 C 1.37876 * 120.00339 * 60.00147 * 11 9 8 14 14 N 1.31514 * 119.99769 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00303 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47055 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47483 * 119.99673 * 15 13 11 18 18 H 1.48500 * 109.47125 * 239.99822 * 15 13 11 19 19 C 1.52996 * 109.46969 * 175.00063 * 4 3 2 20 20 H 1.08993 * 109.46659 * 300.00310 * 1 2 3 21 21 H 1.08998 * 109.46771 * 59.99781 * 1 2 3 22 22 H 1.08996 * 109.46961 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47075 * 59.99684 * 3 2 1 24 24 H 1.09002 * 109.46934 * 299.99800 * 3 2 1 25 25 H 1.09002 * 109.47153 * 60.00035 * 6 4 3 26 26 H 1.08993 * 109.47194 * 300.00323 * 6 4 3 27 27 H 1.08993 * 109.47839 * 300.00447 * 7 6 4 28 28 H 1.09000 * 109.47160 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46801 * 59.99811 * 8 7 6 30 30 H 1.09001 * 109.46998 * 179.97438 * 8 7 6 31 31 H 0.96996 * 119.99725 * 179.97438 * 14 13 11 32 32 H 1.08996 * 109.47452 * 59.99938 * 19 4 3 33 33 H 1.09000 * 109.47054 * 300.00097 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5356 1.1847 0.0006 5 1 3.8515 0.5683 -0.8410 6 6 3.9953 0.5370 1.3083 7 6 5.5205 0.4156 1.3086 8 6 6.1428 1.8077 1.1827 9 6 5.6830 2.4555 -0.1250 10 1 5.9987 1.8388 -0.9665 11 6 6.2964 3.8263 -0.2493 12 1 5.6618 4.6973 -0.3212 13 6 7.6676 3.9686 -0.2713 14 7 8.4403 2.9080 -0.1832 15 14 8.4280 5.6680 -0.4247 16 1 7.3507 6.6867 -0.5066 17 1 9.2772 5.9394 0.7629 18 1 9.2605 5.7287 -1.6528 19 6 4.1574 2.5769 -0.1251 20 1 -0.3632 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.6886 1.8464 0.8900 24 1 1.6887 1.8464 -0.8900 25 1 3.5522 -0.4549 1.3978 26 1 3.6793 1.1533 2.1498 27 1 5.8362 -0.2009 0.4671 28 1 5.8480 -0.0463 2.2400 29 1 5.8270 2.4243 2.0243 30 1 7.2294 1.7214 1.1833 31 1 9.4049 3.0082 -0.1990 32 1 3.8414 3.1934 0.7165 33 1 3.8298 3.0384 -1.0566 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261271265.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:31 Heat of formation + Delta-G solvation = -80.458150 kcal Electronic energy + Delta-G solvation = -13057.750160 eV Core-core repulsion = 10889.193175 eV Total energy + Delta-G solvation = -2168.556985 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.40647 -36.75190 -32.95367 -30.74058 -29.68906 -26.75744 -24.76124 -24.40799 -21.09284 -20.23749 -18.69536 -16.24719 -16.02309 -15.56379 -14.88663 -14.42086 -13.86422 -13.21710 -12.97603 -12.65695 -12.15944 -11.84621 -11.49559 -11.29810 -10.93109 -10.78593 -10.58145 -10.33345 -10.07443 -9.92529 -9.72362 -9.45048 -9.28264 -8.84217 -8.54419 -8.23357 -5.92698 -3.98992 3.32156 3.40189 3.43910 4.01487 4.48239 5.25701 5.29913 5.36547 5.40680 5.55428 5.65233 5.66774 5.83809 5.95063 6.24757 6.33101 6.49448 6.53347 6.59201 6.76061 6.83719 6.91266 7.06688 7.19638 7.34458 7.43168 7.61987 7.81907 8.09349 8.23613 8.53195 9.05546 9.65318 11.12758 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.063059 B = 0.008161 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.923205 B = 3429.961816 C = 3746.009461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.066 3.934 4 C -0.085 4.085 5 H 0.071 0.929 6 C -0.103 4.103 7 C -0.120 4.120 8 C -0.110 4.110 9 C 0.050 3.950 10 H 0.025 0.975 11 C -0.512 4.512 12 H 0.054 0.946 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.888 3.112 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.099 4.099 20 H 0.037 0.963 21 H 0.037 0.963 22 H 0.080 0.920 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.031 0.969 30 H 0.089 0.911 31 H 0.258 0.742 32 H 0.048 0.952 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.787 -3.757 1.483 11.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.011 4.011 4 C -0.103 4.103 5 H 0.089 0.911 6 C -0.140 4.140 7 C -0.157 4.157 8 C -0.148 4.148 9 C 0.032 3.968 10 H 0.043 0.957 11 C -0.550 4.550 12 H 0.072 0.928 13 C -0.141 4.141 14 N -0.529 5.529 15 Si 0.717 3.283 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.137 4.137 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.099 0.901 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.487 -3.963 1.486 11.309 hybrid contribution 0.215 1.172 -0.065 1.193 sum -10.272 -2.791 1.421 10.739 Atomic orbital electron populations 1.22676 0.82108 1.02128 0.99598 1.87901 1.18769 1.29008 1.95333 1.22765 0.95137 0.83665 0.99503 1.21245 0.90760 0.99329 0.99000 0.91080 1.21464 0.96751 0.99351 0.96454 1.21632 0.94336 1.00024 0.99728 1.21615 1.02949 0.91854 0.98405 1.18635 0.88146 0.95898 0.94151 0.95666 1.21271 0.91359 0.92813 1.49539 0.92800 1.24968 0.97380 0.96404 0.95306 1.69899 1.03999 1.28145 1.50896 0.86596 0.79263 0.84913 0.77567 1.19884 1.21106 1.21114 1.21631 0.99337 0.92776 0.99941 0.94481 0.94468 0.90137 0.93727 0.93727 0.92990 0.93112 0.93040 0.94064 0.94986 0.89241 0.93178 0.93345 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.39 -6.12 10.24 -35.23 -0.36 -6.48 16 3 C 0.07 1.04 5.32 37.16 0.20 1.23 16 4 C -0.08 -1.57 2.43 -90.62 -0.22 -1.79 16 5 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 6 C -0.10 -1.88 5.10 -26.73 -0.14 -2.02 16 7 C -0.12 -2.43 5.92 -26.73 -0.16 -2.58 16 8 C -0.11 -2.65 4.98 -26.73 -0.13 -2.79 16 9 C 0.05 1.26 2.10 -91.75 -0.19 1.07 16 10 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 11 C -0.51 -14.19 8.56 -34.44 -0.29 -14.48 16 12 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 13 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 14 N -0.89 -25.73 11.32 55.43 0.63 -25.10 16 15 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 C -0.10 -2.08 4.43 -26.71 -0.12 -2.20 16 20 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 21 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.90 7.82 -51.93 -0.41 0.50 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 263.36 15.07 3.97 3.97 Total: -1.00 -28.80 263.36 -6.58 -35.38 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -5.76 Total: -3.69 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -0.04 Total: -20.50 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.63 Total: -25.10 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.36 Total: -6.48 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.80 -6.58 -35.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261271265.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.081 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds