Wall clock time and date at job start Mon Mar 30 2020 02:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 114.00071 * 2 1 4 4 C 1.53002 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46497 * 55.00223 * 4 3 2 6 6 C 1.52997 * 109.47143 * 294.99993 * 4 3 2 7 7 C 1.52999 * 109.46991 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.46626 * 60.00378 * 7 6 4 9 9 C 1.52997 * 109.47127 * 299.99539 * 8 7 6 10 10 H 1.08996 * 109.46952 * 300.00302 * 9 8 7 11 11 C 1.50696 * 109.47055 * 180.02562 * 9 8 7 12 12 H 1.08008 * 119.99563 * 240.00299 * 11 9 8 13 13 C 1.37876 * 120.00339 * 60.00147 * 11 9 8 14 14 N 1.31514 * 119.99769 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00303 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47055 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47483 * 119.99673 * 15 13 11 18 18 H 1.48500 * 109.47125 * 239.99822 * 15 13 11 19 19 C 1.52996 * 109.46969 * 175.00063 * 4 3 2 20 20 H 1.08993 * 109.46659 * 300.00310 * 1 2 3 21 21 H 1.08998 * 109.46771 * 59.99781 * 1 2 3 22 22 H 1.08996 * 109.46961 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47075 * 59.99684 * 3 2 1 24 24 H 1.09002 * 109.46934 * 299.99800 * 3 2 1 25 25 H 1.09002 * 109.47153 * 60.00035 * 6 4 3 26 26 H 1.08993 * 109.47194 * 300.00323 * 6 4 3 27 27 H 1.08993 * 109.47839 * 300.00447 * 7 6 4 28 28 H 1.09000 * 109.47160 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46801 * 59.99811 * 8 7 6 30 30 H 1.09001 * 109.46998 * 179.97438 * 8 7 6 31 31 H 0.96996 * 119.99725 * 179.97438 * 14 13 11 32 32 H 1.08996 * 109.47452 * 59.99938 * 19 4 3 33 33 H 1.09000 * 109.47054 * 300.00097 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5356 1.1847 0.0006 5 1 3.8515 0.5683 -0.8410 6 6 3.9953 0.5370 1.3083 7 6 5.5205 0.4156 1.3086 8 6 6.1428 1.8077 1.1827 9 6 5.6830 2.4555 -0.1250 10 1 5.9987 1.8388 -0.9665 11 6 6.2964 3.8263 -0.2493 12 1 5.6618 4.6973 -0.3212 13 6 7.6676 3.9686 -0.2713 14 7 8.4403 2.9080 -0.1832 15 14 8.4280 5.6680 -0.4247 16 1 7.3507 6.6867 -0.5066 17 1 9.2772 5.9394 0.7629 18 1 9.2605 5.7287 -1.6528 19 6 4.1574 2.5769 -0.1251 20 1 -0.3632 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.6886 1.8464 0.8900 24 1 1.6887 1.8464 -0.8900 25 1 3.5522 -0.4549 1.3978 26 1 3.6793 1.1533 2.1498 27 1 5.8362 -0.2009 0.4671 28 1 5.8480 -0.0463 2.2400 29 1 5.8270 2.4243 2.0243 30 1 7.2294 1.7214 1.1833 31 1 9.4049 3.0082 -0.1990 32 1 3.8414 3.1934 0.7165 33 1 3.8298 3.0384 -1.0566 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261271265.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:31 Heat of formation + Delta-G solvation = -97.029690 kcal Electronic energy + Delta-G solvation = -13058.468755 eV Core-core repulsion = 10889.193175 eV Total energy + Delta-G solvation = -2169.275581 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.86320 -38.13998 -34.92694 -32.35094 -31.55282 -27.84519 -26.75348 -25.74790 -22.82127 -21.89943 -20.42001 -18.31304 -17.18843 -16.68660 -16.62635 -15.99616 -15.35806 -14.81495 -14.64051 -14.42122 -13.76652 -13.43044 -12.99670 -12.86133 -12.57137 -12.40813 -12.31091 -11.99460 -11.79396 -11.63669 -11.52747 -11.17452 -10.68058 -10.58259 -10.43325 -10.30203 -8.05643 -6.20182 1.40671 1.42333 1.53711 2.44371 2.92831 3.20440 3.89369 4.07552 4.18939 4.44073 4.47660 4.58502 4.62523 4.70221 4.75320 4.85197 4.87410 4.91966 4.93350 5.09242 5.17909 5.21423 5.47670 5.48932 5.50242 5.65753 5.75329 6.05934 6.22252 6.32529 6.43125 6.93278 7.47893 8.98510 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.063059 B = 0.008161 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.923205 B = 3429.961816 C = 3746.009461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.074 3.926 4 C -0.082 4.082 5 H 0.057 0.943 6 C -0.095 4.095 7 C -0.114 4.114 8 C -0.104 4.104 9 C 0.044 3.956 10 H -0.010 1.010 11 C -0.533 4.533 12 H 0.052 0.948 13 C 0.010 3.990 14 N -0.919 5.919 15 Si 0.954 3.046 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.282 1.282 19 C -0.090 4.090 20 H 0.049 0.951 21 H 0.047 0.953 22 H 0.097 0.903 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.028 0.972 30 H 0.055 0.945 31 H 0.259 0.741 32 H 0.053 0.947 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.349 -3.478 1.966 12.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.003 4.003 4 C -0.101 4.101 5 H 0.075 0.925 6 C -0.132 4.132 7 C -0.152 4.152 8 C -0.142 4.142 9 C 0.026 3.974 10 H 0.008 0.992 11 C -0.571 4.571 12 H 0.071 0.929 13 C -0.188 4.188 14 N -0.559 5.559 15 Si 0.779 3.221 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.127 4.127 20 H 0.068 0.932 21 H 0.066 0.934 22 H 0.116 0.884 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.068 -3.687 1.968 12.771 hybrid contribution 0.691 1.051 -0.234 1.280 sum -11.377 -2.635 1.734 11.807 Atomic orbital electron populations 1.22923 0.79761 1.03732 1.00730 1.87848 1.21287 1.28625 1.95553 1.22553 0.92847 0.84256 1.00596 1.21118 0.93127 0.97175 0.98642 0.92490 1.21400 0.94788 1.00429 0.96609 1.21549 0.95964 0.97393 1.00253 1.21435 1.01027 0.94125 0.97601 1.18625 0.91142 0.94313 0.93321 0.99159 1.21660 0.91926 0.93921 1.49614 0.92932 1.25767 0.97947 1.00111 0.95015 1.70045 1.04179 1.30153 1.51477 0.85574 0.78414 0.80508 0.77565 1.19070 1.20633 1.20745 1.21443 0.96370 0.94741 1.00169 0.93229 0.93418 0.88415 0.92444 0.92843 0.91381 0.92171 0.94001 0.92269 0.95319 0.92650 0.93156 0.92864 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.73 16 2 O -0.41 -11.81 10.24 -148.98 -1.53 -13.33 16 3 C 0.07 2.14 5.32 71.98 0.38 2.53 16 4 C -0.08 -2.93 2.43 -10.79 -0.03 -2.95 16 5 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 6 C -0.09 -3.29 5.10 30.59 0.16 -3.14 16 7 C -0.11 -4.56 5.92 30.60 0.18 -4.38 16 8 C -0.10 -5.07 4.98 30.60 0.15 -4.92 16 9 C 0.04 2.28 2.10 -11.53 -0.02 2.26 16 10 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 11 C -0.53 -29.98 8.56 25.60 0.22 -29.76 16 12 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 13 C 0.01 0.55 5.30 84.65 0.45 1.00 16 14 N -0.92 -54.36 11.32 21.45 0.24 -54.11 16 15 Si 0.95 44.25 29.54 68.60 2.03 46.28 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 19 C -0.09 -3.72 4.43 30.61 0.14 -3.58 16 20 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 21 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.07 2.18 7.82 -2.39 -0.02 2.16 16 26 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 29 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 3.08 6.07 -2.39 -0.01 3.06 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -61.72 263.36 4.66 -57.06 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 1.04 Total: 5.33 kcal Atomic # 6 Polarization: -44.10 SS G_CDS: 2.87 Total: -41.22 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.24 Total: -54.11 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.53 Total: -13.33 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -61.72 4.66 -57.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261271265.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.967 kcal (2) G-P(sol) polarization free energy of solvation -61.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds