Wall clock time and date at job start Mon Mar 30 2020 02:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99912 * 2 1 4 4 C 1.52999 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47486 * 305.00590 * 4 3 2 6 6 C 1.53006 * 109.46623 * 65.00419 * 4 3 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47592 * 300.00035 * 7 6 4 9 9 C 1.52996 * 109.47165 * 60.00300 * 8 7 6 10 10 H 1.08996 * 109.47134 * 59.99508 * 9 8 7 11 11 C 1.50697 * 109.47240 * 180.02562 * 9 8 7 12 12 H 1.07999 * 120.00055 * 119.99871 * 11 9 8 13 13 C 1.37875 * 119.99907 * 299.99506 * 11 9 8 14 14 N 1.31524 * 119.99977 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00236 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47295 * 59.99784 * 15 13 11 17 17 H 1.48503 * 109.47431 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46954 * 300.00216 * 15 13 11 19 19 C 1.52997 * 109.47269 * 185.00255 * 4 3 2 20 20 H 1.08999 * 109.47239 * 59.99584 * 1 2 3 21 21 H 1.08999 * 109.46873 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47167 * 299.99421 * 1 2 3 23 23 H 1.09000 * 109.46865 * 60.00255 * 3 2 1 24 24 H 1.08994 * 109.47229 * 300.00235 * 3 2 1 25 25 H 1.08993 * 109.46955 * 300.00075 * 6 4 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 6 4 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 7 6 4 28 28 H 1.09002 * 109.46719 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47140 * 300.00346 * 8 7 6 30 30 H 1.09001 * 109.47375 * 180.02562 * 8 7 6 31 31 H 0.96997 * 119.99907 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.47140 * 300.00547 * 19 4 3 33 33 H 1.09001 * 109.47230 * 59.99691 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5685 0.8426 6 6 3.9961 0.5366 -1.3065 7 6 5.5214 0.4164 -1.3062 8 6 6.1428 1.8089 -1.1806 9 6 5.6821 2.4570 0.1265 10 1 5.9977 1.8410 0.9684 11 6 6.2936 3.8288 0.2498 12 1 5.6579 4.6990 0.3210 13 6 7.6646 3.9729 0.2718 14 7 8.4387 2.9132 0.1846 15 14 8.4227 5.6732 0.4254 16 1 7.9755 6.3018 1.6943 17 1 9.9032 5.5571 0.4248 18 1 7.9921 6.5126 -0.7214 19 6 4.1572 2.5770 0.1264 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.6886 1.8464 0.8900 24 1 1.6886 1.8464 -0.8899 25 1 3.5531 -0.4552 -1.3961 26 1 3.6808 1.1528 -2.1485 27 1 5.8371 -0.1996 -0.4642 28 1 5.8497 -0.0449 -2.2376 29 1 5.8270 2.4249 -2.0226 30 1 7.2294 1.7233 -1.1808 31 1 9.4033 3.0146 0.1997 32 1 3.8418 3.1932 -0.7155 33 1 3.8289 3.0388 1.0576 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261271268.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:33 Heat of formation + Delta-G solvation = -80.379922 kcal Electronic energy + Delta-G solvation = -13057.950082 eV Core-core repulsion = 10889.396490 eV Total energy + Delta-G solvation = -2168.553593 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.40743 -36.75346 -32.95029 -30.73992 -29.69099 -26.75626 -24.75791 -24.40710 -21.08988 -20.23791 -18.69195 -16.24314 -16.02261 -15.56342 -14.88210 -14.42797 -13.86525 -13.21610 -12.97597 -12.64727 -12.16117 -11.84041 -11.49626 -11.29711 -10.89613 -10.78312 -10.62154 -10.33182 -10.07501 -9.93710 -9.71900 -9.45020 -9.27573 -8.84169 -8.55382 -8.22584 -5.92162 -3.98668 3.34750 3.39452 3.41869 4.01536 4.48429 5.25782 5.29915 5.36766 5.40735 5.55444 5.65303 5.66833 5.83864 5.95105 6.24808 6.33176 6.49580 6.53401 6.59299 6.76087 6.83827 6.91544 7.06721 7.19957 7.34617 7.43299 7.62037 7.81760 8.09658 8.23793 8.53358 9.05379 9.65475 11.13198 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.063028 B = 0.008163 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.141932 B = 3429.280249 C = 3745.676509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.066 3.934 4 C -0.085 4.085 5 H 0.071 0.929 6 C -0.103 4.103 7 C -0.120 4.120 8 C -0.110 4.110 9 C 0.051 3.949 10 H 0.025 0.975 11 C -0.513 4.513 12 H 0.053 0.947 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.889 3.111 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.099 4.099 20 H 0.037 0.963 21 H 0.080 0.920 22 H 0.037 0.963 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.031 0.969 30 H 0.089 0.911 31 H 0.259 0.741 32 H 0.048 0.952 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.747 -3.774 -1.482 11.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.011 4.011 4 C -0.103 4.103 5 H 0.089 0.911 6 C -0.140 4.140 7 C -0.157 4.157 8 C -0.148 4.148 9 C 0.032 3.968 10 H 0.043 0.957 11 C -0.552 4.552 12 H 0.071 0.929 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.717 3.283 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.137 4.137 20 H 0.055 0.945 21 H 0.099 0.901 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.437 -3.985 -1.485 11.270 hybrid contribution 0.191 1.192 0.065 1.208 sum -10.246 -2.794 -1.420 10.715 Atomic orbital electron populations 1.22676 0.82110 1.02128 0.99597 1.87900 1.18767 1.29007 1.95332 1.22762 0.95136 0.83664 0.99503 1.21245 0.90759 0.99326 0.99003 0.91079 1.21466 0.96750 0.99351 0.96457 1.21633 0.94335 1.00032 0.99722 1.21614 1.02953 0.91845 0.98413 1.18607 0.88147 0.95855 0.94144 0.95686 1.21195 0.91358 0.92764 1.49838 0.92906 1.24965 0.97352 0.96406 0.95277 1.69881 1.04074 1.28282 1.50704 0.86710 0.78024 0.84964 0.78571 1.20378 1.21350 1.20384 1.21618 0.99350 0.92778 0.99938 0.94481 0.90138 0.94470 0.93734 0.93720 0.92983 0.93118 0.93037 0.94064 0.94988 0.89242 0.93062 0.93353 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.39 -6.12 10.24 -35.23 -0.36 -6.48 16 3 C 0.07 1.04 5.32 37.16 0.20 1.23 16 4 C -0.08 -1.57 2.43 -90.62 -0.22 -1.79 16 5 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 6 C -0.10 -1.88 5.10 -26.73 -0.14 -2.02 16 7 C -0.12 -2.43 5.92 -26.73 -0.16 -2.58 16 8 C -0.11 -2.65 4.98 -26.73 -0.13 -2.79 16 9 C 0.05 1.28 2.10 -91.80 -0.19 1.09 16 10 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 11 C -0.51 -14.24 8.56 -34.44 -0.29 -14.54 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 14 N -0.89 -25.73 11.32 55.43 0.63 -25.11 16 15 Si 0.89 21.46 29.54 -169.99 -5.02 16.43 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.10 -2.09 4.42 -26.75 -0.12 -2.20 16 20 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 21 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 22 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.90 7.82 -51.93 -0.41 0.50 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 263.35 15.07 3.97 3.97 Total: -1.00 -28.75 263.35 -6.58 -35.33 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -5.76 Total: -3.63 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -0.04 Total: -20.52 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.63 Total: -25.11 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.36 Total: -6.48 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.75 -6.58 -35.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261271268.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.051 kcal (2) G-P(sol) polarization free energy of solvation -28.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds