Wall clock time and date at job start Mon Mar 30 2020 02:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99912 * 2 1 4 4 C 1.52999 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47486 * 305.00590 * 4 3 2 6 6 C 1.53006 * 109.46623 * 65.00419 * 4 3 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47592 * 300.00035 * 7 6 4 9 9 C 1.52996 * 109.47165 * 60.00300 * 8 7 6 10 10 H 1.08996 * 109.47134 * 59.99508 * 9 8 7 11 11 C 1.50697 * 109.47240 * 180.02562 * 9 8 7 12 12 H 1.07999 * 120.00055 * 119.99871 * 11 9 8 13 13 C 1.37875 * 119.99907 * 299.99506 * 11 9 8 14 14 N 1.31524 * 119.99977 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00236 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47295 * 59.99784 * 15 13 11 17 17 H 1.48503 * 109.47431 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46954 * 300.00216 * 15 13 11 19 19 C 1.52997 * 109.47269 * 185.00255 * 4 3 2 20 20 H 1.08999 * 109.47239 * 59.99584 * 1 2 3 21 21 H 1.08999 * 109.46873 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47167 * 299.99421 * 1 2 3 23 23 H 1.09000 * 109.46865 * 60.00255 * 3 2 1 24 24 H 1.08994 * 109.47229 * 300.00235 * 3 2 1 25 25 H 1.08993 * 109.46955 * 300.00075 * 6 4 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 6 4 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 7 6 4 28 28 H 1.09002 * 109.46719 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47140 * 300.00346 * 8 7 6 30 30 H 1.09001 * 109.47375 * 180.02562 * 8 7 6 31 31 H 0.96997 * 119.99907 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.47140 * 300.00547 * 19 4 3 33 33 H 1.09001 * 109.47230 * 59.99691 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5685 0.8426 6 6 3.9961 0.5366 -1.3065 7 6 5.5214 0.4164 -1.3062 8 6 6.1428 1.8089 -1.1806 9 6 5.6821 2.4570 0.1265 10 1 5.9977 1.8410 0.9684 11 6 6.2936 3.8288 0.2498 12 1 5.6579 4.6990 0.3210 13 6 7.6646 3.9729 0.2718 14 7 8.4387 2.9132 0.1846 15 14 8.4227 5.6732 0.4254 16 1 7.9755 6.3018 1.6943 17 1 9.9032 5.5571 0.4248 18 1 7.9921 6.5126 -0.7214 19 6 4.1572 2.5770 0.1264 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.6886 1.8464 0.8900 24 1 1.6886 1.8464 -0.8899 25 1 3.5531 -0.4552 -1.3961 26 1 3.6808 1.1528 -2.1485 27 1 5.8371 -0.1996 -0.4642 28 1 5.8497 -0.0449 -2.2376 29 1 5.8270 2.4249 -2.0226 30 1 7.2294 1.7233 -1.1808 31 1 9.4033 3.0146 0.1997 32 1 3.8418 3.1932 -0.7155 33 1 3.8289 3.0388 1.0576 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261271268.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:33 Heat of formation + Delta-G solvation = -96.908001 kcal Electronic energy + Delta-G solvation = -13058.666794 eV Core-core repulsion = 10889.396490 eV Total energy + Delta-G solvation = -2169.270304 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.86527 -38.14173 -34.92322 -32.35088 -31.55517 -27.84452 -26.74894 -25.74855 -22.81883 -21.90011 -20.41792 -18.30674 -17.18827 -16.68672 -16.62574 -15.99994 -15.35918 -14.81447 -14.63509 -14.41451 -13.76928 -13.42412 -13.00022 -12.81892 -12.58539 -12.42670 -12.31720 -11.99189 -11.80556 -11.63394 -11.53104 -11.16732 -10.68294 -10.58357 -10.43326 -10.29695 -8.05105 -6.19879 1.42312 1.43638 1.51265 2.44683 2.92832 3.20726 3.89376 4.07552 4.18944 4.44055 4.47615 4.58473 4.62492 4.70164 4.75300 4.85245 4.87404 4.91972 4.93365 5.09242 5.18152 5.21434 5.47714 5.48909 5.50283 5.65481 5.75383 6.06028 6.22401 6.32543 6.43194 6.93164 7.48058 8.98622 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.063028 B = 0.008163 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.141932 B = 3429.280249 C = 3745.676509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.074 3.926 4 C -0.082 4.082 5 H 0.057 0.943 6 C -0.095 4.095 7 C -0.114 4.114 8 C -0.104 4.104 9 C 0.045 3.955 10 H -0.010 1.010 11 C -0.536 4.536 12 H 0.053 0.947 13 C 0.010 3.990 14 N -0.918 5.918 15 Si 0.953 3.047 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.271 1.271 19 C -0.090 4.090 20 H 0.049 0.951 21 H 0.097 0.903 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.028 0.972 30 H 0.055 0.945 31 H 0.259 0.741 32 H 0.052 0.948 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.317 -3.482 -1.963 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.002 4.002 4 C -0.101 4.101 5 H 0.075 0.925 6 C -0.132 4.132 7 C -0.152 4.152 8 C -0.142 4.142 9 C 0.027 3.973 10 H 0.008 0.992 11 C -0.574 4.574 12 H 0.071 0.929 13 C -0.188 4.188 14 N -0.558 5.558 15 Si 0.779 3.221 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.127 4.127 20 H 0.068 0.932 21 H 0.116 0.884 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.028 -3.695 -1.964 12.736 hybrid contribution 0.667 1.067 0.234 1.280 sum -11.361 -2.629 -1.731 11.789 Atomic orbital electron populations 1.22923 0.79764 1.03732 1.00729 1.87847 1.21286 1.28622 1.95552 1.22551 0.92845 0.84256 1.00595 1.21119 0.93128 0.97173 0.98644 0.92486 1.21402 0.94789 1.00430 0.96609 1.21549 0.95963 0.97396 1.00251 1.21434 1.01037 0.94115 0.97599 1.18598 0.91144 0.94284 0.93308 0.99187 1.21607 0.91950 0.93921 1.49902 0.92912 1.25767 0.97912 1.00134 0.94974 1.70035 1.04174 1.30283 1.51309 0.85686 0.77105 0.80469 0.78836 1.19685 1.21040 1.19588 1.21430 0.96386 0.94744 1.00164 0.93229 0.88415 0.93421 0.92851 0.92438 0.91369 0.92188 0.93991 0.92268 0.95346 0.92638 0.93142 0.92878 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.73 16 2 O -0.41 -11.81 10.24 -148.98 -1.53 -13.33 16 3 C 0.07 2.15 5.32 71.98 0.38 2.53 16 4 C -0.08 -2.93 2.43 -10.79 -0.03 -2.95 16 5 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 6 C -0.09 -3.30 5.10 30.60 0.16 -3.14 16 7 C -0.11 -4.57 5.92 30.59 0.18 -4.39 16 8 C -0.10 -5.07 4.98 30.59 0.15 -4.92 16 9 C 0.05 2.32 2.10 -11.56 -0.02 2.30 16 10 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 11 C -0.54 -30.13 8.56 25.60 0.22 -29.91 16 12 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 13 C 0.01 0.59 5.30 84.65 0.45 1.04 16 14 N -0.92 -54.36 11.32 21.45 0.24 -54.11 16 15 Si 0.95 44.21 29.54 68.60 2.03 46.23 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 19 C -0.09 -3.72 4.42 30.58 0.14 -3.59 16 20 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 21 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.07 2.19 7.82 -2.39 -0.02 2.17 16 26 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 31 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -61.64 263.35 4.66 -56.98 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 1.04 Total: 5.55 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 2.87 Total: -41.32 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.24 Total: -54.11 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.53 Total: -13.33 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -61.64 4.66 -56.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261271268.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.929 kcal (2) G-P(sol) polarization free energy of solvation -61.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds