Wall clock time and date at job start Mon Mar 30 2020 02:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00239 * 2 1 4 4 C 1.53002 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46930 * 55.00058 * 4 3 2 6 6 C 1.53001 * 109.46963 * 295.00317 * 4 3 2 7 7 C 1.53002 * 109.46637 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.46977 * 59.99946 * 7 6 4 9 9 C 1.52997 * 109.47127 * 299.99541 * 8 7 6 10 10 H 1.09002 * 109.47153 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47212 * 300.00129 * 9 8 7 12 12 H 1.07999 * 119.99742 * 119.99976 * 11 9 8 13 13 C 1.37875 * 120.00221 * 300.00211 * 11 9 8 14 14 N 1.31509 * 120.00392 * 180.02562 * 13 11 9 15 15 Si 1.86799 * 119.99966 * 359.97438 * 13 11 9 16 16 H 1.48505 * 109.47157 * 90.00092 * 15 13 11 17 17 H 1.48496 * 109.47225 * 210.00367 * 15 13 11 18 18 H 1.48502 * 109.47022 * 330.00490 * 15 13 11 19 19 C 1.52996 * 109.46969 * 175.00063 * 4 3 2 20 20 H 1.09003 * 109.47090 * 59.99539 * 1 2 3 21 21 H 1.08995 * 109.47652 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46998 * 300.00575 * 1 2 3 23 23 H 1.09000 * 109.47075 * 59.99675 * 3 2 1 24 24 H 1.09002 * 109.46934 * 299.99791 * 3 2 1 25 25 H 1.08996 * 109.46778 * 299.99646 * 6 4 3 26 26 H 1.08992 * 109.47514 * 59.99933 * 6 4 3 27 27 H 1.09000 * 109.46986 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.47662 * 299.99908 * 7 6 4 29 29 H 1.08998 * 109.46505 * 179.97438 * 8 7 6 30 30 H 1.08996 * 109.46884 * 60.00293 * 8 7 6 31 31 H 0.96997 * 120.00462 * 179.97438 * 14 13 11 32 32 H 1.08996 * 109.47452 * 59.99938 * 19 4 3 33 33 H 1.09000 * 109.47054 * 300.00097 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8515 0.5682 -0.8410 6 6 3.9952 0.5368 1.3083 7 6 5.5204 0.4154 1.3086 8 6 6.1428 1.8075 1.1826 9 6 5.6831 2.4552 -0.1250 10 1 6.1268 3.4467 -0.2150 11 6 6.1194 1.6027 -1.2886 12 1 5.3826 1.1888 -1.9610 13 6 7.4593 1.3510 -1.4946 14 7 7.8401 0.6074 -2.5102 15 14 8.7337 2.0673 -0.3319 16 1 8.9804 1.1144 0.7801 17 1 9.9999 2.3046 -1.0706 18 1 8.2340 3.3525 0.2193 19 6 4.1574 2.5768 -0.1251 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.6886 1.8464 0.8900 24 1 1.6887 1.8464 -0.8900 25 1 3.6792 1.1533 2.1498 26 1 3.5521 -0.4550 1.3978 27 1 5.8480 -0.0457 2.2403 28 1 5.8360 -0.2012 0.4671 29 1 7.2293 1.7210 1.1833 30 1 5.8272 2.4240 2.0242 31 1 8.7828 0.4306 -2.6554 32 1 3.8414 3.1933 0.7165 33 1 3.8298 3.0383 -1.0566 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261271269.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:34 Heat of formation + Delta-G solvation = -88.267613 kcal Electronic energy + Delta-G solvation = -13365.470533 eV Core-core repulsion = 11196.574905 eV Total energy + Delta-G solvation = -2168.895629 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.04972 -38.25738 -34.62373 -32.68101 -31.74378 -27.94881 -26.75017 -25.88520 -22.97405 -21.97896 -20.51272 -18.12340 -17.21264 -16.83708 -16.67738 -16.19974 -15.50130 -15.04600 -14.67246 -14.36242 -14.02230 -13.51895 -13.06502 -12.92796 -12.76872 -12.41050 -12.21742 -11.95992 -11.72425 -11.65258 -11.48106 -10.91539 -10.73760 -10.59142 -10.52537 -10.44111 -8.21848 -6.21532 1.32496 1.36783 1.47139 2.37486 2.95982 3.15137 3.95026 4.03631 4.14915 4.40094 4.43835 4.57726 4.60520 4.65498 4.71602 4.81010 4.85701 4.89819 4.90015 4.93566 5.02089 5.11403 5.30439 5.43857 5.56757 5.64800 5.69473 5.77642 5.88797 6.36727 6.42090 6.84247 7.41667 8.95246 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053677 B = 0.010234 C = 0.009687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.514927 B = 2735.438724 C = 2889.752179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.072 3.928 4 C -0.079 4.079 5 H 0.044 0.956 6 C -0.090 4.090 7 C -0.108 4.108 8 C -0.119 4.119 9 C 0.002 3.998 10 H 0.025 0.975 11 C -0.491 4.491 12 H 0.033 0.967 13 C 0.007 3.993 14 N -0.956 5.956 15 Si 0.946 3.054 16 H -0.272 1.272 17 H -0.305 1.305 18 H -0.245 1.245 19 C -0.084 4.084 20 H 0.045 0.955 21 H 0.094 0.906 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.036 0.964 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.261 0.739 32 H 0.074 0.926 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.329 2.882 9.689 15.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.004 4.004 4 C -0.098 4.098 5 H 0.062 0.938 6 C -0.127 4.127 7 C -0.146 4.146 8 C -0.156 4.156 9 C -0.017 4.017 10 H 0.043 0.957 11 C -0.530 4.530 12 H 0.051 0.949 13 C -0.189 4.189 14 N -0.598 5.598 15 Si 0.774 3.226 16 H -0.198 1.198 17 H -0.234 1.234 18 H -0.169 1.169 19 C -0.121 4.121 20 H 0.063 0.937 21 H 0.112 0.888 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.097 2.656 9.607 14.917 hybrid contribution 0.877 0.066 -0.309 0.932 sum -10.221 2.722 9.299 14.083 Atomic orbital electron populations 1.22911 0.79811 1.03591 1.00782 1.87878 1.21302 1.29071 1.95546 1.22622 0.93085 0.84103 1.00579 1.21014 0.92518 0.97591 0.98673 0.93773 1.21330 0.94420 1.00341 0.96658 1.21360 0.96293 0.96939 0.99999 1.21824 0.97851 0.97386 0.98517 1.19235 0.94422 0.95258 0.92768 0.95721 1.21286 0.91871 1.29449 1.10344 0.94850 1.25830 1.00857 0.95436 0.96747 1.70062 1.16496 1.41197 1.32064 0.85885 0.77702 0.80483 0.78532 1.19810 1.23359 1.16934 1.21283 0.94978 0.95173 1.00693 0.93659 0.88785 0.92706 0.91423 0.93455 0.90692 0.92495 0.92083 0.94551 0.95445 0.91066 0.93033 0.90726 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.42 -13.09 10.24 -148.98 -1.53 -14.62 16 3 C 0.07 2.17 5.32 71.98 0.38 2.55 16 4 C -0.08 -2.96 2.20 -10.79 -0.02 -2.98 16 5 H 0.04 2.06 6.62 -2.38 -0.02 2.04 16 6 C -0.09 -3.11 5.10 30.60 0.16 -2.96 16 7 C -0.11 -4.32 5.70 30.60 0.17 -4.14 16 8 C -0.12 -4.86 4.94 30.60 0.15 -4.71 16 9 C 0.00 0.09 2.18 -11.52 -0.03 0.06 16 10 H 0.02 1.13 7.20 -2.39 -0.02 1.12 16 11 C -0.49 -27.83 7.19 25.60 0.18 -27.65 16 12 H 0.03 2.12 6.95 -2.91 -0.02 2.10 16 13 C 0.01 0.40 5.45 84.66 0.46 0.86 16 14 N -0.96 -61.25 13.96 21.45 0.30 -60.95 16 15 Si 0.95 46.11 24.37 68.60 1.67 47.78 16 16 H -0.27 -12.76 6.87 99.48 0.68 -12.08 16 17 H -0.31 -14.99 7.11 99.48 0.71 -14.29 16 18 H -0.25 -10.97 6.53 99.48 0.65 -10.32 16 19 C -0.08 -3.14 4.70 30.61 0.14 -3.00 16 20 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 21 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 25 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.06 1.96 7.82 -2.39 -0.02 1.94 16 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.04 1.74 7.22 -2.39 -0.02 1.73 16 29 H 0.03 1.20 3.27 -2.39 -0.01 1.20 16 30 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -66.63 251.67 4.28 -62.35 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 0.98 Total: 5.62 kcal Atomic # 6 Polarization: -43.03 SS G_CDS: 2.85 Total: -40.18 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.30 Total: -60.95 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -1.53 Total: -14.62 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.67 Total: 47.78 kcal Total: -66.63 4.28 -62.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261271269.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.914 kcal (2) G-P(sol) polarization free energy of solvation -66.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds