Wall clock time and date at job start Mon Mar 30 2020 02:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.42899 * 113.99629 * 180.02562 * 3 2 1 5 5 C 1.53009 * 109.47113 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47468 * 300.00097 * 4 3 2 7 7 H 1.07998 * 120.00466 * 119.99913 * 6 4 3 8 8 C 1.37876 * 119.99627 * 300.00499 * 6 4 3 9 9 N 1.31519 * 120.00487 * 359.97438 * 8 6 4 10 10 Si 1.86805 * 120.00016 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47068 * 59.99135 * 10 8 6 12 12 H 1.48497 * 109.47119 * 179.97438 * 10 8 6 13 13 H 1.48509 * 109.46740 * 299.99575 * 10 8 6 14 14 C 1.53000 * 109.47634 * 60.00037 * 4 3 2 15 15 C 1.53005 * 109.46612 * 64.99470 * 14 4 3 16 16 C 1.52998 * 117.50149 * 243.74760 * 15 14 4 17 17 C 1.53006 * 117.49303 * 175.08714 * 15 14 4 18 18 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 19 19 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 21 21 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 22 22 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 23 23 H 1.08998 * 109.46733 * 60.00191 * 5 4 3 24 24 H 1.08997 * 109.46916 * 179.97438 * 5 4 3 25 25 H 1.08997 * 109.46502 * 300.00085 * 5 4 3 26 26 H 0.96998 * 120.00418 * 180.02562 * 9 8 6 27 27 H 1.08992 * 109.47705 * 184.99611 * 14 4 3 28 28 H 1.09003 * 109.47122 * 305.00584 * 14 4 3 29 29 H 1.09001 * 115.55118 * 29.42556 * 15 14 4 30 30 H 1.09002 * 117.49640 * 0.02562 * 16 15 14 31 31 H 1.09001 * 117.50058 * 145.02227 * 16 15 14 32 32 H 1.08999 * 117.49881 * 214.97781 * 17 15 14 33 33 H 1.08998 * 117.50351 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 6 3.9883 0.7915 1.2295 7 1 4.6765 -0.0348 1.1301 8 6 3.6195 1.2345 2.4820 9 7 2.7816 2.2410 2.6033 10 14 4.3110 0.4061 4.0069 11 1 5.7913 0.5240 4.0060 12 1 3.7631 1.0650 5.2197 13 1 3.9287 -1.0289 4.0070 14 6 3.9957 0.7817 -1.2501 15 6 3.5292 1.5376 -2.4959 16 6 2.6266 0.7900 -3.4793 17 6 4.0834 1.0822 -3.8474 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.8934 -0.5139 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 3.4229 3.4215 0.8906 24 1 4.9119 3.0246 0.0001 25 1 3.4221 3.4225 -0.8894 26 1 2.5225 2.5529 3.4844 27 1 5.0848 0.7895 -1.2070 28 1 3.6413 -0.2481 -1.2961 29 1 3.3499 2.6040 -2.3590 30 1 2.3647 -0.2404 -3.2385 31 1 1.8535 1.3645 -3.9896 32 1 4.2682 1.8489 -4.5998 33 1 4.7807 0.2444 -3.8490 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261272579.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:01 Heat of formation + Delta-G solvation = -46.933118 kcal Electronic energy + Delta-G solvation = -13556.293107 eV Core-core repulsion = 11389.189877 eV Total energy + Delta-G solvation = -2167.103230 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.69924 -37.41496 -34.83927 -32.93294 -30.81216 -27.83089 -27.31263 -23.29350 -23.10850 -22.46136 -20.27439 -18.61389 -17.07192 -16.62947 -15.89859 -15.66076 -15.29783 -14.92747 -14.36780 -13.60902 -13.35979 -13.15787 -12.87816 -12.81234 -12.46531 -12.38689 -12.31864 -12.16899 -12.11637 -11.89471 -11.46519 -10.92259 -10.61051 -10.55413 -10.42526 -9.58422 -7.97990 -6.23474 1.40100 1.40895 1.47896 2.42561 3.05890 3.17815 3.67004 3.95972 4.15875 4.23665 4.41917 4.56291 4.69765 4.80654 4.83627 4.85031 4.94041 4.97527 5.05623 5.15650 5.20698 5.31166 5.34177 5.42314 5.45478 5.57367 5.63350 5.72040 6.15988 6.32291 6.81392 7.28015 7.55776 8.99058 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037149 B = 0.012697 C = 0.011052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.543200 B = 2204.687704 C = 2532.867088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.072 3.928 3 O -0.389 6.389 4 C 0.230 3.770 5 C -0.118 4.118 6 C -0.568 4.568 7 H 0.045 0.955 8 C 0.039 3.961 9 N -0.882 5.882 10 Si 0.938 3.062 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.275 1.275 14 C -0.097 4.097 15 C -0.157 4.157 16 C -0.176 4.176 17 C -0.173 4.173 18 H 0.060 0.940 19 H 0.081 0.919 20 H 0.039 0.961 21 H 0.016 0.984 22 H 0.034 0.966 23 H 0.057 0.943 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.257 0.743 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 -3.018 -8.004 8.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.005 4.005 3 O -0.309 6.309 4 C 0.192 3.808 5 C -0.175 4.175 6 C -0.606 4.606 7 H 0.063 0.937 8 C -0.164 4.164 9 N -0.519 5.519 10 Si 0.764 3.236 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.200 1.200 14 C -0.135 4.135 15 C -0.175 4.175 16 C -0.212 4.212 17 C -0.210 4.210 18 H 0.079 0.921 19 H 0.100 0.900 20 H 0.059 0.941 21 H 0.035 0.965 22 H 0.052 0.948 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.752 -2.734 -7.877 8.372 hybrid contribution 0.565 -0.567 1.210 1.451 sum -0.188 -3.301 -6.667 7.442 Atomic orbital electron populations 1.21661 0.94066 1.02045 1.01559 1.21993 0.94491 0.86215 0.97790 1.87805 1.23707 1.24767 1.94605 1.18997 0.78581 0.92923 0.90282 1.21582 0.98417 0.97093 1.00433 1.21775 1.28644 1.17591 0.92567 0.93688 1.25597 0.94549 0.95032 1.01189 1.70113 1.32634 1.25837 1.23307 0.85945 0.78983 0.78923 0.79721 1.19677 1.20979 1.20026 1.21626 0.99391 0.98151 0.94348 1.22341 1.05137 0.99573 0.90477 1.22971 0.93783 1.00993 1.03498 1.23041 0.96344 1.03649 0.97944 0.92114 0.89972 0.94143 0.96529 0.94811 0.92378 0.94081 0.94500 0.93348 0.92796 0.93359 0.88641 0.89521 0.88358 0.87602 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 10.28 71.98 0.74 -4.21 16 2 C 0.07 3.21 5.96 71.98 0.43 3.64 16 3 O -0.39 -19.85 9.15 -148.98 -1.36 -21.22 16 4 C 0.23 11.46 0.41 -11.54 0.00 11.45 16 5 C -0.12 -5.80 8.30 71.99 0.60 -5.20 16 6 C -0.57 -31.03 6.76 25.60 0.17 -30.86 16 7 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 8 C 0.04 2.16 5.24 84.65 0.44 2.60 16 9 N -0.88 -50.83 10.87 21.45 0.23 -50.60 16 10 Si 0.94 43.53 29.54 68.60 2.03 45.55 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 14 C -0.10 -4.09 4.28 30.60 0.13 -3.96 16 15 C -0.16 -5.59 5.27 -10.79 -0.06 -5.65 16 16 C -0.18 -5.25 10.18 30.62 0.31 -4.94 16 17 C -0.17 -4.79 10.26 30.62 0.31 -4.48 16 18 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 19 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 20 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.02 0.82 7.15 -2.39 -0.02 0.80 16 22 H 0.03 1.39 6.31 -2.39 -0.02 1.37 16 23 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 24 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.04 1.63 5.94 -2.39 -0.01 1.62 16 26 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 27 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.05 2.01 6.02 -2.39 -0.01 2.00 16 29 H 0.10 3.60 5.79 -2.39 -0.01 3.59 16 30 H 0.09 2.58 8.03 -2.39 -0.02 2.56 16 31 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -59.86 264.31 5.04 -54.82 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 1.06 Total: 13.04 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 3.08 Total: -41.60 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.23 Total: -50.60 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -1.36 Total: -21.22 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -59.86 5.04 -54.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272579.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.887 kcal (2) G-P(sol) polarization free energy of solvation -59.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds