Wall clock time and date at job start Mon Mar 30 2020 02:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 O 1.42897 * 109.46855 * 2 1 4 4 C 1.42897 * 113.99544 * 184.92385 * 3 2 1 5 5 C 1.52999 * 109.47525 * 54.53193 * 4 3 2 6 6 C 1.50699 * 109.47221 * 294.52565 * 4 3 2 7 7 H 1.08008 * 119.99923 * 146.90791 * 6 4 3 8 8 C 1.37879 * 120.00174 * 326.91715 * 6 4 3 9 9 N 1.31518 * 120.00026 * 193.78919 * 8 6 4 10 10 Si 1.86799 * 120.00144 * 13.78582 * 8 6 4 11 11 H 1.48500 * 109.46853 * 84.90311 * 10 8 6 12 12 H 1.48498 * 109.47132 * 204.90905 * 10 8 6 13 13 H 1.48505 * 109.46738 * 324.90843 * 10 8 6 14 14 C 1.53006 * 109.47167 * 174.53168 * 4 3 2 15 15 C 1.53001 * 109.47229 * 67.33580 * 14 4 3 16 16 C 1.53001 * 117.51574 * 117.25741 * 15 14 4 17 17 C 1.52994 * 117.50171 * 185.88584 * 15 14 4 18 18 H 1.09002 * 109.46762 * 65.70344 * 1 2 3 19 19 H 1.08997 * 109.46963 * 185.70055 * 1 2 3 20 20 H 1.08996 * 109.46612 * 305.70212 * 1 2 3 21 21 H 1.09001 * 109.46900 * 239.99731 * 2 1 3 22 22 H 1.09003 * 109.46897 * 120.00117 * 2 1 3 23 23 H 1.09003 * 109.47267 * 180.02562 * 5 4 3 24 24 H 1.09004 * 109.46688 * 299.99578 * 5 4 3 25 25 H 1.08996 * 109.47193 * 60.00042 * 5 4 3 26 26 H 0.96993 * 119.99842 * 179.97438 * 9 8 6 27 27 H 1.08996 * 109.46673 * 307.34026 * 14 4 3 28 28 H 1.08997 * 109.47662 * 187.33862 * 14 4 3 29 29 H 1.08999 * 115.55227 * 331.56100 * 15 14 4 30 30 H 1.09005 * 117.49832 * 214.96934 * 16 15 14 31 31 H 1.09001 * 117.50034 * 359.97438 * 16 15 14 32 32 H 1.09004 * 117.49894 * 359.97438 * 17 15 14 33 33 H 1.09001 * 117.49910 * 144.99704 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4264 1.4617 -0.1121 5 6 3.9030 0.7022 -1.3517 6 6 4.0759 0.8773 1.1158 7 1 5.0340 0.3849 1.0374 8 6 3.4469 0.9709 2.3392 9 7 4.1140 0.7132 3.4430 10 14 1.6474 1.4637 2.4290 11 1 0.7952 0.2623 2.2403 12 1 1.3651 2.0675 3.7560 13 1 1.3513 2.4531 1.3619 14 6 3.8107 2.9372 -0.2389 15 6 3.4998 3.6599 1.0734 16 6 4.6747 4.2715 1.8391 17 6 3.6851 5.1782 1.1048 18 1 -0.3633 0.4229 -0.9367 19 1 -0.3633 -1.0226 0.1021 20 1 -0.3632 0.5997 0.8345 21 1 1.8934 -0.5139 -0.8900 22 1 1.8934 -0.5139 0.8900 23 1 4.9863 0.7891 -1.4369 24 1 3.6293 -0.3491 -1.2613 25 1 3.4333 1.1249 -2.2398 26 1 3.6716 0.7794 4.3036 27 1 3.2406 3.3928 -1.0484 28 1 4.8761 3.0180 -0.4545 29 1 2.6814 3.2405 1.6586 30 1 4.6293 4.2546 2.9281 31 1 5.6696 4.1588 1.4083 32 1 4.0289 5.6624 0.1907 33 1 2.9885 5.7578 1.7106 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261272580.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:03 Heat of formation + Delta-G solvation = -1.974246 kcal Electronic energy + Delta-G solvation = -13933.966819 eV Core-core repulsion = 11768.813152 eV Total energy + Delta-G solvation = -2165.153667 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.46512 -36.24698 -32.74646 -31.57482 -29.67734 -26.75071 -25.14876 -22.10713 -21.53892 -20.25580 -18.99734 -17.20626 -16.19055 -15.20730 -14.46411 -13.91629 -13.55656 -13.00158 -12.90520 -12.48174 -11.94109 -11.78821 -11.50363 -11.25332 -10.89756 -10.87243 -10.72246 -10.51413 -9.95350 -9.80845 -9.41772 -9.37974 -8.94263 -8.53988 -8.42871 -7.58960 -6.01815 -4.07157 3.46445 3.59737 3.80356 4.61515 4.69079 4.83798 5.30058 5.54253 5.71757 5.80848 5.88337 5.90402 6.10302 6.20444 6.25246 6.28686 6.34470 6.45484 6.48543 6.61798 6.68882 6.72298 6.74847 6.78024 6.90288 6.99808 7.29009 7.38527 7.74887 8.12969 8.65643 8.96385 9.63322 11.07434 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.029455 B = 0.019490 C = 0.016692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.365352 B = 1436.288955 C = 1677.068517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.040 3.960 3 O -0.376 6.376 4 C 0.198 3.802 5 C -0.161 4.161 6 C -0.545 4.545 7 H 0.073 0.927 8 C 0.079 3.921 9 N -0.891 5.891 10 Si 0.908 3.092 11 H -0.284 1.284 12 H -0.336 1.336 13 H -0.226 1.226 14 C -0.059 4.059 15 C -0.122 4.122 16 C -0.163 4.163 17 C -0.210 4.210 18 H 0.053 0.947 19 H 0.060 0.940 20 H 0.058 0.942 21 H 0.045 0.955 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.261 0.739 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.843 2.737 -6.298 7.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.036 4.036 3 O -0.298 6.298 4 C 0.161 3.839 5 C -0.218 4.218 6 C -0.582 4.582 7 H 0.092 0.908 8 C -0.125 4.125 9 N -0.527 5.527 10 Si 0.746 3.254 11 H -0.212 1.212 12 H -0.269 1.269 13 H -0.154 1.154 14 C -0.096 4.096 15 C -0.139 4.139 16 C -0.200 4.200 17 C -0.247 4.247 18 H 0.072 0.928 19 H 0.079 0.921 20 H 0.077 0.923 21 H 0.064 0.936 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.128 0.872 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.919 2.858 -6.115 7.805 hybrid contribution -0.583 -0.102 0.275 0.652 sum -4.501 2.756 -5.840 7.872 Atomic orbital electron populations 1.21982 0.95769 1.01395 1.01951 1.22410 0.93273 0.86661 1.01251 1.88166 1.25000 1.24612 1.91981 1.19629 0.78057 0.92303 0.93938 1.22322 1.00798 1.00697 0.98009 1.21131 1.07204 1.39076 0.90758 0.90844 1.25089 0.99173 0.93110 0.95100 1.70023 1.36520 1.48396 0.97724 0.87321 0.84877 0.80002 0.73178 1.21215 1.26899 1.15381 1.21126 0.99402 0.95027 0.94086 1.22544 1.00715 0.91297 0.99377 1.22740 0.94877 1.03702 0.98659 1.23004 1.04476 0.94722 1.02454 0.92757 0.92144 0.92293 0.93637 0.91996 0.92847 0.92902 0.94572 0.92995 0.93906 0.91838 0.87240 0.89828 0.89548 0.89897 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.51 37.16 0.35 -2.39 16 2 C 0.04 0.84 4.56 37.16 0.17 1.01 16 3 O -0.38 -8.71 5.53 -35.23 -0.19 -8.91 16 4 C 0.20 4.61 0.70 -91.77 -0.06 4.55 16 5 C -0.16 -3.23 8.06 37.16 0.30 -2.93 16 6 C -0.54 -14.85 7.58 -34.44 -0.26 -15.11 16 7 H 0.07 2.19 8.06 -52.48 -0.42 1.77 16 8 C 0.08 2.23 4.52 -17.82 -0.08 2.15 16 9 N -0.89 -26.98 13.96 55.43 0.77 -26.20 16 10 Si 0.91 23.17 19.06 -169.99 -3.24 19.93 16 11 H -0.28 -6.87 4.82 56.52 0.27 -6.60 16 12 H -0.34 -9.00 7.11 56.52 0.40 -8.60 16 13 H -0.23 -5.61 4.52 56.52 0.26 -5.35 16 14 C -0.06 -1.27 4.80 -26.73 -0.13 -1.40 16 15 C -0.12 -2.72 4.09 -90.62 -0.37 -3.09 16 16 C -0.16 -3.38 10.18 -26.73 -0.27 -3.66 16 17 C -0.21 -3.89 10.25 -26.74 -0.27 -4.16 16 18 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 19 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 20 H 0.06 1.12 5.73 -51.93 -0.30 0.82 16 21 H 0.05 0.87 6.06 -51.93 -0.31 0.56 16 22 H 0.06 1.45 5.33 -51.93 -0.28 1.18 16 23 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.05 1.04 6.37 -51.93 -0.33 0.71 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 1.31 7.87 -51.93 -0.41 0.90 16 29 H 0.11 2.71 2.32 -51.93 -0.12 2.59 16 30 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 31 H 0.09 1.72 8.03 -51.93 -0.42 1.30 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 242.45 15.07 3.65 3.65 Total: -1.00 -29.55 242.45 -5.02 -34.57 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.38 Total: 1.99 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -0.63 Total: -25.03 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.77 Total: -26.20 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.19 Total: -8.91 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -3.24 Total: 19.93 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.55 -5.02 -34.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272580.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.598 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds