Wall clock time and date at job start Mon Mar 30 2020 02:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 O 1.42897 * 109.46855 * 2 1 4 4 C 1.42897 * 113.99544 * 184.92385 * 3 2 1 5 5 C 1.52999 * 109.47525 * 54.53193 * 4 3 2 6 6 C 1.50699 * 109.47221 * 294.52565 * 4 3 2 7 7 H 1.08008 * 119.99923 * 146.90791 * 6 4 3 8 8 C 1.37879 * 120.00174 * 326.91715 * 6 4 3 9 9 N 1.31518 * 120.00026 * 193.78919 * 8 6 4 10 10 Si 1.86799 * 120.00144 * 13.78582 * 8 6 4 11 11 H 1.48500 * 109.46853 * 84.90311 * 10 8 6 12 12 H 1.48498 * 109.47132 * 204.90905 * 10 8 6 13 13 H 1.48505 * 109.46738 * 324.90843 * 10 8 6 14 14 C 1.53006 * 109.47167 * 174.53168 * 4 3 2 15 15 C 1.53001 * 109.47229 * 67.33580 * 14 4 3 16 16 C 1.53001 * 117.51574 * 117.25741 * 15 14 4 17 17 C 1.52994 * 117.50171 * 185.88584 * 15 14 4 18 18 H 1.09002 * 109.46762 * 65.70344 * 1 2 3 19 19 H 1.08997 * 109.46963 * 185.70055 * 1 2 3 20 20 H 1.08996 * 109.46612 * 305.70212 * 1 2 3 21 21 H 1.09001 * 109.46900 * 239.99731 * 2 1 3 22 22 H 1.09003 * 109.46897 * 120.00117 * 2 1 3 23 23 H 1.09003 * 109.47267 * 180.02562 * 5 4 3 24 24 H 1.09004 * 109.46688 * 299.99578 * 5 4 3 25 25 H 1.08996 * 109.47193 * 60.00042 * 5 4 3 26 26 H 0.96993 * 119.99842 * 179.97438 * 9 8 6 27 27 H 1.08996 * 109.46673 * 307.34026 * 14 4 3 28 28 H 1.08997 * 109.47662 * 187.33862 * 14 4 3 29 29 H 1.08999 * 115.55227 * 331.56100 * 15 14 4 30 30 H 1.09005 * 117.49832 * 214.96934 * 16 15 14 31 31 H 1.09001 * 117.50034 * 359.97438 * 16 15 14 32 32 H 1.09004 * 117.49894 * 359.97438 * 17 15 14 33 33 H 1.09001 * 117.49910 * 144.99704 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4264 1.4617 -0.1121 5 6 3.9030 0.7022 -1.3517 6 6 4.0759 0.8773 1.1158 7 1 5.0340 0.3849 1.0374 8 6 3.4469 0.9709 2.3392 9 7 4.1140 0.7132 3.4430 10 14 1.6474 1.4637 2.4290 11 1 0.7952 0.2623 2.2403 12 1 1.3651 2.0675 3.7560 13 1 1.3513 2.4531 1.3619 14 6 3.8107 2.9372 -0.2389 15 6 3.4998 3.6599 1.0734 16 6 4.6747 4.2715 1.8391 17 6 3.6851 5.1782 1.1048 18 1 -0.3633 0.4229 -0.9367 19 1 -0.3633 -1.0226 0.1021 20 1 -0.3632 0.5997 0.8345 21 1 1.8934 -0.5139 -0.8900 22 1 1.8934 -0.5139 0.8900 23 1 4.9863 0.7891 -1.4369 24 1 3.6293 -0.3491 -1.2613 25 1 3.4333 1.1249 -2.2398 26 1 3.6716 0.7794 4.3036 27 1 3.2406 3.3928 -1.0484 28 1 4.8761 3.0180 -0.4545 29 1 2.6814 3.2405 1.6586 30 1 4.6293 4.2546 2.9281 31 1 5.6696 4.1588 1.4083 32 1 4.0289 5.6624 0.1907 33 1 2.9885 5.7578 1.7106 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261272580.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:03 Heat of formation + Delta-G solvation = -21.515516 kcal Electronic energy + Delta-G solvation = -13934.814192 eV Core-core repulsion = 11768.813152 eV Total energy + Delta-G solvation = -2166.001041 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.23354 -37.88445 -34.67574 -33.48324 -31.28488 -28.37719 -27.25217 -23.68178 -23.08883 -21.97300 -20.80441 -19.24894 -18.01507 -16.89783 -16.27270 -15.68943 -15.23993 -14.91271 -14.74667 -14.19409 -13.49912 -13.39909 -13.18903 -12.92032 -12.56625 -12.48100 -12.32196 -12.26009 -11.98434 -11.54104 -11.27056 -11.05986 -10.71467 -10.54933 -10.33044 -9.43840 -8.23923 -6.30032 1.43298 1.51438 1.75826 2.50406 2.99588 3.10589 3.29479 3.94099 4.21441 4.23928 4.26515 4.40605 4.58786 4.64141 4.68320 4.72556 4.80842 4.82496 4.88969 5.06043 5.08697 5.09951 5.18732 5.24567 5.33530 5.37682 5.55821 5.64809 5.77472 6.05461 6.67510 6.77942 7.45090 8.88573 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.029455 B = 0.019490 C = 0.016692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.365352 B = 1436.288955 C = 1677.068517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.031 3.969 3 O -0.381 6.381 4 C 0.191 3.809 5 C -0.155 4.155 6 C -0.535 4.535 7 H 0.034 0.966 8 C 0.037 3.963 9 N -0.939 5.939 10 Si 0.954 3.046 11 H -0.267 1.267 12 H -0.361 1.361 13 H -0.209 1.209 14 C -0.056 4.056 15 C -0.157 4.157 16 C -0.178 4.178 17 C -0.170 4.170 18 H 0.078 0.922 19 H 0.085 0.915 20 H 0.045 0.955 21 H 0.066 0.934 22 H 0.029 0.971 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.257 0.743 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 3.755 -8.672 10.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.045 4.045 3 O -0.303 6.303 4 C 0.153 3.847 5 C -0.213 4.213 6 C -0.572 4.572 7 H 0.052 0.948 8 C -0.161 4.161 9 N -0.578 5.578 10 Si 0.792 3.208 11 H -0.194 1.194 12 H -0.297 1.297 13 H -0.136 1.136 14 C -0.093 4.093 15 C -0.174 4.174 16 C -0.215 4.215 17 C -0.206 4.206 18 H 0.097 0.903 19 H 0.103 0.897 20 H 0.064 0.936 21 H 0.084 0.916 22 H 0.047 0.953 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.131 0.869 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.307 3.866 -8.532 10.765 hybrid contribution -0.066 -0.459 0.992 1.095 sum -5.373 3.407 -7.539 9.865 Atomic orbital electron populations 1.21994 0.93029 1.03079 1.02713 1.22598 0.95564 0.85590 1.00707 1.88101 1.24487 1.25917 1.91839 1.19687 0.78099 0.93727 0.93146 1.22222 1.01167 1.00334 0.97536 1.21354 1.05600 1.37608 0.92633 0.94763 1.25707 1.02354 0.93290 0.94776 1.70155 1.38049 1.51345 0.98267 0.86606 0.81462 0.80624 0.72099 1.19391 1.29686 1.13558 1.21087 1.00078 0.93641 0.94508 1.22546 1.00599 0.94454 0.99837 1.22736 0.95321 1.05615 0.97873 1.23097 1.02281 0.92398 1.02864 0.90299 0.89651 0.93639 0.91582 0.95253 0.92620 0.93050 0.91646 0.93465 0.91444 0.91329 0.89838 0.91606 0.89101 0.86932 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.85 9.51 71.99 0.68 -4.17 16 2 C 0.03 1.24 4.56 71.99 0.33 1.57 16 3 O -0.38 -16.72 5.53 -148.98 -0.82 -17.54 16 4 C 0.19 8.55 0.70 -11.54 -0.01 8.54 16 5 C -0.16 -5.82 8.06 71.98 0.58 -5.24 16 6 C -0.53 -29.54 7.58 25.60 0.19 -29.34 16 7 H 0.03 2.12 8.06 -2.91 -0.02 2.09 16 8 C 0.04 2.15 4.52 84.65 0.38 2.53 16 9 N -0.94 -59.21 13.96 21.45 0.30 -58.91 16 10 Si 0.95 48.34 19.06 68.60 1.31 49.64 16 11 H -0.27 -12.55 4.82 99.48 0.48 -12.07 16 12 H -0.36 -19.61 7.11 99.48 0.71 -18.90 16 13 H -0.21 -9.96 4.52 99.48 0.45 -9.51 16 14 C -0.06 -2.25 4.80 30.60 0.15 -2.11 16 15 C -0.16 -6.73 4.09 -10.79 -0.04 -6.77 16 16 C -0.18 -7.27 10.18 30.59 0.31 -6.96 16 17 C -0.17 -5.74 10.25 30.59 0.31 -5.43 16 18 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 19 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 20 H 0.04 1.57 5.73 -2.39 -0.01 1.56 16 21 H 0.07 2.33 6.06 -2.39 -0.01 2.32 16 22 H 0.03 1.35 5.33 -2.39 -0.01 1.34 16 23 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.05 1.91 6.37 -2.38 -0.02 1.89 16 25 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 27 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.07 2.67 7.87 -2.39 -0.02 2.65 16 29 H 0.08 4.05 2.32 -2.39 -0.01 4.04 16 30 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 31 H 0.09 3.55 8.03 -2.39 -0.02 3.53 16 32 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -64.88 242.45 4.26 -60.62 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.59 Total: 13.56 kcal Atomic # 6 Polarization: -50.27 SS G_CDS: 2.89 Total: -47.38 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.30 Total: -58.91 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.82 Total: -17.54 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 1.31 Total: 49.64 kcal Total: -64.88 4.26 -60.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272580.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.104 kcal (2) G-P(sol) polarization free energy of solvation -64.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds