Wall clock time and date at job start Mon Mar 30 2020 02:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00201 * 2 1 4 4 C 1.53000 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47137 * 175.00338 * 4 3 2 6 6 C 1.53000 * 109.47137 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47355 * 300.00155 * 6 5 4 8 8 C 1.50694 * 109.47168 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00563 * 359.97438 * 8 7 6 10 10 C 1.37885 * 119.99902 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99792 * 179.72330 * 10 8 7 12 12 Si 1.86795 * 120.00009 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47088 * 89.99795 * 12 10 8 14 14 H 1.48495 * 109.47293 * 209.99997 * 12 10 8 15 15 H 1.48507 * 109.47015 * 329.99955 * 12 10 8 16 16 C 1.53000 * 109.47124 * 59.99497 * 7 6 5 17 17 C 1.53000 * 109.47415 * 300.00466 * 16 7 6 18 18 H 1.09003 * 109.47745 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47233 * 299.99784 * 1 2 3 20 20 H 1.09005 * 109.47215 * 59.99493 * 1 2 3 21 21 H 1.09004 * 109.46706 * 60.00304 * 3 2 1 22 22 H 1.08998 * 109.47468 * 300.00447 * 3 2 1 23 23 H 1.09002 * 109.46807 * 55.00202 * 4 3 2 24 24 H 1.09002 * 109.47384 * 60.00217 * 5 4 3 25 25 H 1.08995 * 109.47132 * 300.00161 * 5 4 3 26 26 H 1.09000 * 109.46966 * 179.97438 * 6 5 4 27 27 H 1.09002 * 109.46807 * 59.99864 * 6 5 4 28 28 H 1.09002 * 109.46926 * 299.99636 * 7 6 5 29 29 H 0.97000 * 119.99468 * 179.97438 * 11 10 8 30 30 H 1.09007 * 109.46721 * 60.00490 * 16 7 6 31 31 H 1.08995 * 109.47131 * 180.02562 * 16 7 6 32 32 H 1.09002 * 109.46807 * 299.99967 * 17 16 7 33 33 H 1.09000 * 109.46966 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1574 2.5767 -0.1250 6 6 5.6826 2.4559 -0.1237 7 6 6.1419 1.8083 1.1842 8 6 7.6441 1.6888 1.1852 9 1 8.2143 2.0393 0.3375 10 6 8.2907 1.1320 2.2682 11 7 9.6013 1.0227 2.2667 12 14 7.3045 0.5252 3.7340 13 1 6.9434 -0.9010 3.5314 14 1 8.1191 0.6590 4.9683 15 1 6.0669 1.3350 3.8675 16 6 5.5199 0.4161 1.3099 17 6 3.9947 0.5369 1.3086 18 1 -0.3635 -1.0276 -0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 1.6886 1.8462 0.8901 22 1 1.6886 1.8464 -0.8899 23 1 3.8514 0.5681 -0.8410 24 1 3.8415 3.1932 0.7166 25 1 3.8299 3.0383 -1.0565 26 1 6.1257 3.4478 -0.2137 27 1 5.9989 1.8394 -0.9651 28 1 5.8256 2.4249 2.0256 29 1 10.0562 0.6313 3.0289 30 1 5.8363 -0.2004 0.4684 31 1 5.8467 -0.0450 2.2418 32 1 3.6784 1.1535 2.1500 33 1 3.5516 -0.4550 1.3977 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261292483.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:05 Heat of formation + Delta-G solvation = -92.443962 kcal Electronic energy + Delta-G solvation = -13133.546538 eV Core-core repulsion = 10964.469809 eV Total energy + Delta-G solvation = -2169.076729 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.99289 -38.23876 -34.98300 -32.77332 -31.59490 -28.59412 -26.90229 -24.73212 -23.53878 -21.77390 -20.52555 -18.76006 -17.20872 -17.02620 -16.68284 -16.02753 -15.19295 -14.97161 -14.91477 -14.54401 -14.16883 -13.47683 -13.26523 -12.94588 -12.72444 -12.35551 -12.23649 -11.98811 -11.86002 -11.63521 -11.58450 -11.15989 -10.88277 -10.62095 -10.58805 -10.41392 -8.29519 -6.31974 1.30365 1.34154 1.45796 2.32851 2.91585 3.06335 3.82275 4.00125 4.06958 4.35989 4.45606 4.51321 4.57291 4.59188 4.67882 4.75839 4.79062 4.80911 4.88365 4.92222 4.96641 5.12471 5.22791 5.39213 5.39798 5.50267 5.65142 5.73875 5.84830 6.33009 6.35265 6.76128 7.33556 8.87674 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053601 B = 0.009490 C = 0.008454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.249299 B = 2949.873776 C = 3311.056355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.071 3.929 4 C -0.081 4.081 5 C -0.102 4.102 6 C -0.096 4.096 7 C 0.011 3.989 8 C -0.518 4.518 9 H 0.031 0.969 10 C 0.008 3.992 11 N -0.953 5.953 12 Si 0.951 3.049 13 H -0.271 1.271 14 H -0.299 1.299 15 H -0.245 1.245 16 C -0.119 4.119 17 C -0.105 4.105 18 H 0.093 0.907 19 H 0.048 0.952 20 H 0.052 0.948 21 H 0.056 0.944 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.023 0.977 29 H 0.264 0.736 30 H 0.047 0.953 31 H 0.029 0.971 32 H 0.058 0.942 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.284 0.481 -3.065 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.005 4.005 4 C -0.099 4.099 5 C -0.139 4.139 6 C -0.134 4.134 7 C -0.008 4.008 8 C -0.556 4.556 9 H 0.050 0.950 10 C -0.188 4.188 11 N -0.594 5.594 12 Si 0.778 3.222 13 H -0.198 1.198 14 H -0.227 1.227 15 H -0.169 1.169 16 C -0.156 4.156 17 C -0.142 4.142 18 H 0.111 0.889 19 H 0.066 0.934 20 H 0.070 0.930 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.042 0.268 -2.985 19.276 hybrid contribution 0.401 -0.259 0.710 0.856 sum -18.641 0.009 -2.274 18.779 Atomic orbital electron populations 1.22906 0.79756 1.03582 1.00820 1.87863 1.21274 1.29007 1.95579 1.22605 0.92570 0.84262 1.01095 1.21092 0.93421 0.97424 0.97991 1.21489 0.94290 0.95531 1.02637 1.21346 0.95283 0.99578 0.97146 1.19149 0.92763 0.93155 0.95699 1.21510 0.92363 1.38934 1.02807 0.95017 1.25913 0.95612 0.95811 1.01486 1.70064 1.09672 1.47375 1.32331 0.85796 0.79052 0.79394 0.77916 1.19791 1.22713 1.16879 1.21866 0.95473 0.98965 0.99308 1.21516 0.94343 1.00689 0.97670 0.88893 0.93361 0.92966 0.92532 0.91602 0.91394 0.91410 0.89977 0.93059 0.93619 0.95917 0.92693 0.93387 0.95289 0.92332 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.42 -10.73 10.24 -148.98 -1.53 -12.25 16 3 C 0.07 1.67 5.32 71.98 0.38 2.05 16 4 C -0.08 -2.37 2.43 -10.79 -0.03 -2.40 16 5 C -0.10 -2.97 5.20 30.59 0.16 -2.81 16 6 C -0.10 -3.74 5.14 30.59 0.16 -3.58 16 7 C 0.01 0.52 1.69 -11.54 -0.02 0.50 16 8 C -0.52 -30.45 9.14 25.60 0.23 -30.22 16 9 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 10 C 0.01 0.48 5.45 84.66 0.46 0.95 16 11 N -0.95 -61.50 13.96 21.45 0.30 -61.20 16 12 Si 0.95 46.89 24.37 68.60 1.67 48.56 16 13 H -0.27 -12.94 6.87 99.48 0.68 -12.25 16 14 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 15 H -0.24 -11.15 6.53 99.48 0.65 -10.50 16 16 C -0.12 -5.15 4.68 30.59 0.14 -5.01 16 17 C -0.10 -3.61 5.10 30.60 0.16 -3.45 16 18 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 19 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 20 H 0.05 0.73 8.14 -2.38 -0.02 0.72 16 21 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 29 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 30 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.03 1.33 3.27 -2.39 -0.01 1.32 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 2.07 7.82 -2.39 -0.02 2.06 16 Total: -1.00 -67.59 256.53 4.31 -63.28 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: 0.97 Total: 3.90 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 2.90 Total: -42.29 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 0.30 Total: -61.20 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -1.53 Total: -12.25 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.67 Total: 48.56 kcal Total: -67.59 4.31 -63.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261292483.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.164 kcal (2) G-P(sol) polarization free energy of solvation -67.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds