Wall clock time and date at job start Mon Mar 30 2020 02:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00614 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00454 * 3 2 1 6 6 H 1.48499 * 109.47161 * 150.00179 * 3 2 1 7 7 C 1.37873 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 11 11 C 1.53002 * 109.47389 * 300.00158 * 9 7 2 12 12 N 1.46896 * 109.47382 * 185.00013 * 11 9 7 13 13 N 1.46906 * 109.47140 * 180.02562 * 9 7 2 14 14 C 1.46843 * 110.99661 * 59.21249 * 13 9 7 15 15 C 1.53045 * 109.51997 * 174.16180 * 14 13 9 16 16 C 1.53120 * 109.27889 * 59.17991 * 15 14 13 17 17 C 1.53124 * 109.15780 * 302.34206 * 16 15 14 18 18 C 1.46847 * 110.99889 * 295.00168 * 13 9 7 19 19 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46691 * 305.00440 * 11 9 7 21 21 H 1.09003 * 109.47073 * 64.99586 * 11 9 7 22 22 H 1.00900 * 111.00530 * 179.97438 * 12 11 9 23 23 H 1.00903 * 110.99874 * 303.95577 * 12 11 9 24 24 H 1.09006 * 109.46162 * 294.17003 * 14 13 9 25 25 H 1.08997 * 109.46937 * 54.14600 * 14 13 9 26 26 H 1.08998 * 109.50067 * 299.23314 * 15 14 13 27 27 H 1.09006 * 109.50074 * 179.11558 * 15 14 13 28 28 H 1.08993 * 109.51785 * 182.44318 * 16 15 14 29 29 H 1.08992 * 109.57709 * 62.27934 * 16 15 14 30 30 H 1.08995 * 109.50175 * 297.71483 * 17 16 15 31 31 H 1.08998 * 109.53239 * 177.61613 * 17 16 15 32 32 H 1.09007 * 109.46071 * 305.84980 * 18 13 9 33 33 H 1.08994 * 109.46325 * 65.83525 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 6 0.3720 -2.5805 1.2490 12 7 -0.2702 -3.9002 1.3108 13 7 2.2058 -3.6157 -0.0005 14 6 3.0811 -3.5596 1.1772 15 6 3.9607 -4.8113 1.2207 16 6 4.7990 -4.8848 -0.0585 17 6 3.8649 -4.8932 -1.2717 18 6 2.9882 -3.6391 -1.2430 19 1 -0.4850 0.8400 0.0004 20 1 0.9876 -2.4339 2.1365 21 1 -0.3934 -1.8056 1.2058 22 1 -0.8565 -3.9792 2.1282 23 1 -0.7952 -4.0866 0.4695 24 1 3.7132 -2.6735 1.1181 25 1 2.4725 -3.5118 2.0802 26 1 3.3297 -5.6970 1.2938 27 1 4.6213 -4.7619 2.0864 28 1 5.3950 -5.7973 -0.0513 29 1 5.4590 -4.0190 -0.1128 30 1 3.2325 -5.7802 -1.2379 31 1 4.4565 -4.9027 -2.1871 32 1 2.3119 -3.6492 -2.0979 33 1 3.6207 -2.7528 -1.2906 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261294095.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:34 Heat of formation + Delta-G solvation = -8.217014 kcal Electronic energy + Delta-G solvation = -13566.606091 eV Core-core repulsion = 11433.474468 eV Total energy + Delta-G solvation = -2133.131623 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.20971 -34.73550 -32.13988 -31.41886 -29.97178 -26.97127 -24.07988 -22.94250 -22.03168 -19.64906 -18.80430 -16.35076 -15.48195 -14.63425 -14.10100 -13.93048 -13.68944 -13.14073 -12.98400 -12.79974 -12.07556 -11.94054 -11.38013 -11.03958 -11.00238 -10.80632 -10.39956 -10.33079 -10.08566 -9.96533 -9.61853 -9.32429 -9.21014 -8.46402 -7.41610 -6.91287 -6.00544 -4.15279 3.24540 3.31819 3.35248 4.37059 5.15846 5.20910 5.49095 5.52972 5.59657 5.90108 6.03110 6.21609 6.26463 6.31768 6.49532 6.53535 6.62242 6.63039 6.83388 6.89513 7.01440 7.06140 7.11640 7.52487 7.56161 7.89867 8.14781 8.22375 8.45756 8.54319 8.59269 9.00998 9.52665 10.96407 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033660 B = 0.013247 C = 0.010917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.645726 B = 2113.137094 C = 2564.263982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.058 0.942 9 C 0.217 3.783 10 H 0.034 0.966 11 C 0.070 3.930 12 N -0.843 5.843 13 N -0.516 5.516 14 C 0.068 3.932 15 C -0.115 4.115 16 C -0.117 4.117 17 C -0.115 4.115 18 C 0.062 3.938 19 H 0.261 0.739 20 H 0.044 0.956 21 H 0.057 0.943 22 H 0.312 0.688 23 H 0.327 0.673 24 H 0.027 0.973 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.151 -6.257 0.625 7.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.076 0.924 9 C 0.110 3.890 10 H 0.052 0.948 11 C -0.060 4.060 12 N -0.370 5.370 13 N -0.240 5.240 14 C -0.060 4.060 15 C -0.153 4.153 16 C -0.154 4.154 17 C -0.152 4.152 18 C -0.067 4.067 19 H 0.071 0.929 20 H 0.062 0.938 21 H 0.075 0.925 22 H 0.122 0.878 23 H 0.138 0.862 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.476 -6.838 0.695 8.202 hybrid contribution 0.032 2.424 -0.123 2.427 sum 4.508 -4.414 0.572 6.335 Atomic orbital electron populations 1.69884 1.05876 1.26588 1.50477 1.24943 0.94806 0.99058 0.94681 0.86647 0.79965 0.83604 0.78135 1.20671 1.21190 1.19979 1.21755 0.93395 0.91712 1.51240 0.92378 1.19213 0.89835 0.85843 0.94113 0.94840 1.21995 0.97792 0.87608 0.98624 1.58875 1.38087 1.34315 1.05711 1.62286 1.16117 1.45603 0.99971 1.21813 0.94379 0.94623 0.95221 1.21608 0.97693 0.99923 0.96113 1.21529 0.97619 1.00300 0.95979 1.21592 0.97502 0.99487 0.96667 1.21847 0.95525 0.95286 0.94022 0.92918 0.93766 0.92459 0.87819 0.86186 0.95482 0.91313 0.91785 0.93187 0.93222 0.92910 0.91907 0.93063 0.92298 0.95146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.85 11.38 55.43 0.63 -24.22 16 2 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.54 -14.55 7.19 -34.44 -0.25 -14.80 16 8 H 0.06 1.59 5.84 -52.48 -0.31 1.28 16 9 C 0.22 5.41 1.99 -68.86 -0.14 5.27 16 10 H 0.03 0.93 8.08 -51.93 -0.42 0.51 16 11 C 0.07 1.66 5.50 -3.83 -0.02 1.64 16 12 N -0.84 -16.95 9.35 -10.37 -0.10 -17.04 16 13 N -0.52 -11.31 4.37 -228.07 -1.00 -12.30 16 14 C 0.07 1.41 4.79 -3.83 -0.02 1.39 16 15 C -0.12 -1.97 6.09 -26.65 -0.16 -2.13 16 16 C -0.12 -1.84 6.00 -26.61 -0.16 -2.00 16 17 C -0.11 -1.90 6.09 -26.65 -0.16 -2.07 16 18 C 0.06 1.26 5.12 -3.83 -0.02 1.24 16 19 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 20 H 0.04 1.08 6.56 -51.93 -0.34 0.74 16 21 H 0.06 1.50 6.22 -51.93 -0.32 1.18 16 22 H 0.31 5.53 9.08 -39.29 -0.36 5.18 16 23 H 0.33 6.43 8.99 -39.29 -0.35 6.08 16 24 H 0.03 0.61 6.63 -51.93 -0.34 0.26 16 25 H 0.07 1.49 6.14 -51.93 -0.32 1.17 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 33 H 0.03 0.67 6.96 -51.93 -0.36 0.31 16 LS Contribution 253.77 15.07 3.82 3.82 Total: -1.00 -27.38 253.77 -7.90 -35.27 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.21 Total: 8.04 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -1.02 Total: -9.71 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.46 Total: -53.57 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.38 -7.90 -35.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294095.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.057 kcal (2) G-P(sol) polarization free energy of solvation -27.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds