Wall clock time and date at job start Mon Mar 30 2020 02:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00614 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00454 * 3 2 1 6 6 H 1.48499 * 109.47161 * 150.00179 * 3 2 1 7 7 C 1.37873 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 11 11 C 1.53002 * 109.47389 * 300.00158 * 9 7 2 12 12 N 1.46896 * 109.47382 * 185.00013 * 11 9 7 13 13 N 1.46906 * 109.47140 * 180.02562 * 9 7 2 14 14 C 1.46843 * 110.99661 * 59.21249 * 13 9 7 15 15 C 1.53045 * 109.51997 * 174.16180 * 14 13 9 16 16 C 1.53120 * 109.27889 * 59.17991 * 15 14 13 17 17 C 1.53124 * 109.15780 * 302.34206 * 16 15 14 18 18 C 1.46847 * 110.99889 * 295.00168 * 13 9 7 19 19 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46691 * 305.00440 * 11 9 7 21 21 H 1.09003 * 109.47073 * 64.99586 * 11 9 7 22 22 H 1.00900 * 111.00530 * 179.97438 * 12 11 9 23 23 H 1.00903 * 110.99874 * 303.95577 * 12 11 9 24 24 H 1.09006 * 109.46162 * 294.17003 * 14 13 9 25 25 H 1.08997 * 109.46937 * 54.14600 * 14 13 9 26 26 H 1.08998 * 109.50067 * 299.23314 * 15 14 13 27 27 H 1.09006 * 109.50074 * 179.11558 * 15 14 13 28 28 H 1.08993 * 109.51785 * 182.44318 * 16 15 14 29 29 H 1.08992 * 109.57709 * 62.27934 * 16 15 14 30 30 H 1.08995 * 109.50175 * 297.71483 * 17 16 15 31 31 H 1.08998 * 109.53239 * 177.61613 * 17 16 15 32 32 H 1.09007 * 109.46071 * 305.84980 * 18 13 9 33 33 H 1.08994 * 109.46325 * 65.83525 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 6 0.3720 -2.5805 1.2490 12 7 -0.2702 -3.9002 1.3108 13 7 2.2058 -3.6157 -0.0005 14 6 3.0811 -3.5596 1.1772 15 6 3.9607 -4.8113 1.2207 16 6 4.7990 -4.8848 -0.0585 17 6 3.8649 -4.8932 -1.2717 18 6 2.9882 -3.6391 -1.2430 19 1 -0.4850 0.8400 0.0004 20 1 0.9876 -2.4339 2.1365 21 1 -0.3934 -1.8056 1.2058 22 1 -0.8565 -3.9792 2.1282 23 1 -0.7952 -4.0866 0.4695 24 1 3.7132 -2.6735 1.1181 25 1 2.4725 -3.5118 2.0802 26 1 3.3297 -5.6970 1.2938 27 1 4.6213 -4.7619 2.0864 28 1 5.3950 -5.7973 -0.0513 29 1 5.4590 -4.0190 -0.1128 30 1 3.2325 -5.7802 -1.2379 31 1 4.4565 -4.9027 -2.1871 32 1 2.3119 -3.6492 -2.0979 33 1 3.6207 -2.7528 -1.2906 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261294095.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:34 Heat of formation + Delta-G solvation = -27.993166 kcal Electronic energy + Delta-G solvation = -13567.463650 eV Core-core repulsion = 11433.474468 eV Total energy + Delta-G solvation = -2133.989181 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.88104 -36.47858 -34.14144 -33.07769 -31.49058 -28.87108 -26.04879 -24.57237 -23.58248 -21.40525 -20.47328 -18.34012 -17.26791 -16.51926 -15.86650 -15.60010 -15.16342 -14.83686 -14.65545 -14.37843 -13.89316 -13.69553 -13.03508 -12.91504 -12.80389 -12.58061 -12.13065 -11.91766 -11.87575 -11.56797 -11.39001 -11.03592 -10.83017 -10.54249 -9.20270 -8.78813 -8.04713 -6.30726 1.34180 1.36198 1.45267 2.36602 3.09323 3.49341 4.09443 4.14884 4.17312 4.26894 4.53619 4.69218 4.74985 4.81776 4.90808 5.05897 5.11489 5.16663 5.20805 5.23257 5.36443 5.38652 5.49360 5.61686 5.64166 5.84366 6.16924 6.36551 6.55049 6.78966 6.89694 7.02623 7.40798 8.86268 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033660 B = 0.013247 C = 0.010917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.645726 B = 2113.137094 C = 2564.263982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.022 3.978 3 Si 0.948 3.052 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.552 4.552 8 H 0.048 0.952 9 C 0.221 3.779 10 H 0.000 1.000 11 C 0.088 3.912 12 N -0.833 5.833 13 N -0.514 5.514 14 C 0.070 3.930 15 C -0.108 4.108 16 C -0.114 4.114 17 C -0.106 4.106 18 C 0.060 3.940 19 H 0.262 0.738 20 H 0.034 0.966 21 H 0.030 0.970 22 H 0.330 0.670 23 H 0.332 0.668 24 H 0.004 0.996 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.387 -7.269 0.817 9.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.178 4.178 3 Si 0.774 3.226 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.592 4.592 8 H 0.066 0.934 9 C 0.113 3.887 10 H 0.018 0.982 11 C -0.044 4.044 12 N -0.361 5.361 13 N -0.237 5.237 14 C -0.058 4.058 15 C -0.146 4.146 16 C -0.152 4.152 17 C -0.144 4.144 18 C -0.069 4.069 19 H 0.071 0.929 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.141 0.859 23 H 0.144 0.856 24 H 0.022 0.978 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 5.713 -7.869 0.892 9.765 hybrid contribution -0.380 2.709 -0.192 2.742 sum 5.333 -5.160 0.700 7.453 Atomic orbital electron populations 1.69998 1.06930 1.27282 1.50924 1.25636 0.95613 1.02051 0.94468 0.85713 0.78775 0.79947 0.78176 1.20260 1.20587 1.19800 1.21929 0.93017 0.92987 1.51254 0.93409 1.19015 0.90253 0.86372 0.93047 0.98230 1.21613 0.96837 0.88449 0.97475 1.58742 1.38708 1.31836 1.06823 1.62278 1.16462 1.43775 1.01218 1.21822 0.94091 0.95934 0.93954 1.21563 0.97525 0.97550 0.97972 1.21537 0.97337 1.01800 0.94488 1.21547 0.97268 0.97124 0.98466 1.21929 0.95391 0.96697 0.92903 0.92855 0.94774 0.95146 0.85868 0.85642 0.97818 0.92683 0.91464 0.91015 0.89864 0.93341 0.91363 0.90688 0.93329 0.97363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.87 11.38 21.45 0.24 -51.62 16 2 C 0.02 1.23 5.30 84.65 0.45 1.68 16 3 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.55 -30.38 7.19 25.60 0.18 -30.20 16 8 H 0.05 2.68 5.84 -2.91 -0.02 2.66 16 9 C 0.22 11.29 1.99 44.17 0.09 11.38 16 10 H 0.00 -0.01 8.08 -2.38 -0.02 -0.03 16 11 C 0.09 4.21 5.50 86.30 0.47 4.69 16 12 N -0.83 -33.10 9.35 -186.72 -1.75 -34.84 16 13 N -0.51 -22.58 4.37 -875.47 -3.82 -26.40 16 14 C 0.07 2.89 4.79 86.33 0.41 3.30 16 15 C -0.11 -3.41 6.09 30.65 0.19 -3.23 16 16 C -0.11 -3.23 6.00 30.68 0.18 -3.05 16 17 C -0.11 -3.26 6.09 30.65 0.19 -3.08 16 18 C 0.06 2.41 5.12 86.33 0.44 2.85 16 19 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 20 H 0.03 1.69 6.56 -2.39 -0.02 1.68 16 21 H 0.03 1.63 6.22 -2.39 -0.01 1.62 16 22 H 0.33 11.33 9.08 -89.69 -0.81 10.52 16 23 H 0.33 12.92 8.99 -89.69 -0.81 12.12 16 24 H 0.00 0.16 6.63 -2.38 -0.02 0.15 16 25 H 0.05 2.38 6.14 -2.39 -0.01 2.36 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 27 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.05 2.02 8.08 -2.38 -0.02 2.00 16 33 H 0.01 0.36 6.96 -2.39 -0.02 0.35 16 Total: -1.00 -58.87 253.77 -1.21 -60.08 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.52 Total: 22.63 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 2.61 Total: -15.64 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -5.32 Total: -112.87 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -58.87 -1.21 -60.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294095.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.087 kcal (2) G-P(sol) polarization free energy of solvation -58.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds