Wall clock time and date at job start Mon Mar 30 2020 02:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99733 * 2 1 4 4 H 1.48506 * 109.47339 * 240.00231 * 3 2 1 5 5 H 1.48497 * 109.47432 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47332 * 120.00360 * 3 2 1 7 7 C 1.37874 * 120.00343 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99925 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99963 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46844 * 299.99689 * 9 7 2 11 11 C 1.52995 * 109.47376 * 59.99705 * 9 7 2 12 12 N 1.46903 * 109.47056 * 65.76207 * 11 9 7 13 13 N 1.46897 * 109.47407 * 179.97438 * 9 7 2 14 14 C 1.46848 * 111.00443 * 183.41378 * 13 9 7 15 15 C 1.53040 * 109.52470 * 174.15867 * 14 13 9 16 16 C 1.53116 * 109.27737 * 59.18294 * 15 14 13 17 17 C 1.53119 * 109.16202 * 302.34570 * 16 15 14 18 18 C 1.46848 * 111.00014 * 59.20322 * 13 9 7 19 19 H 0.96996 * 120.00287 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47342 * 305.75934 * 11 9 7 21 21 H 1.09003 * 109.47428 * 185.75904 * 11 9 7 22 22 H 1.00904 * 111.00004 * 174.09482 * 12 11 9 23 23 H 1.00904 * 110.99890 * 298.04541 * 12 11 9 24 24 H 1.08991 * 109.46541 * 294.17895 * 14 13 9 25 25 H 1.09005 * 109.45597 * 54.14609 * 14 13 9 26 26 H 1.08997 * 109.50032 * 299.24239 * 15 14 13 27 27 H 1.08996 * 109.50103 * 179.12197 * 15 14 13 28 28 H 1.09001 * 109.52282 * 182.44155 * 16 15 14 29 29 H 1.08995 * 109.57578 * 62.27651 * 16 15 14 30 30 H 1.09006 * 109.50466 * 297.71523 * 17 16 15 31 31 H 1.09000 * 109.53949 * 177.61631 * 17 16 15 32 32 H 1.08998 * 109.46787 * 305.85907 * 18 13 9 33 33 H 1.09000 * 109.46211 * 65.83601 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 1 0.6242 -2.5574 0.8881 11 6 0.3720 -2.5794 -1.2512 12 7 1.2240 -2.6397 -2.4464 13 7 2.2058 -3.6156 -0.0027 14 6 1.5077 -4.9049 -0.0855 15 6 2.5319 -6.0327 -0.2308 16 6 3.4745 -6.0181 0.9757 17 6 4.1524 -4.6483 1.0674 18 6 3.0812 -3.5605 1.1750 19 1 -0.4850 0.8400 0.0004 20 1 -0.2660 -1.6971 -1.3040 21 1 -0.2486 -3.4741 -1.2020 22 1 0.6715 -2.7898 -3.2772 23 1 1.7865 -1.8063 -2.5320 24 1 0.9228 -5.0601 0.8210 25 1 0.8438 -4.9035 -0.9501 26 1 3.1079 -5.8856 -1.1444 27 1 2.0141 -6.9908 -0.2766 28 1 4.2323 -6.7923 0.8553 29 1 2.9051 -6.2043 1.8863 30 1 4.7540 -4.4794 0.1741 31 1 4.7929 -4.6167 1.9487 32 1 3.5603 -2.5828 1.2260 33 1 2.4890 -3.7222 2.0756 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261294098.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:35 Heat of formation + Delta-G solvation = -5.091539 kcal Electronic energy + Delta-G solvation = -13543.134248 eV Core-core repulsion = 11410.138156 eV Total energy + Delta-G solvation = -2132.996092 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.19739 -34.81515 -31.94201 -31.38657 -30.03555 -26.96299 -24.38364 -22.97334 -21.90388 -19.58756 -18.74638 -16.13224 -15.60587 -14.66048 -14.29243 -13.87004 -13.73490 -13.16814 -12.94525 -12.73224 -12.21907 -11.68694 -11.49639 -11.11222 -10.81250 -10.66142 -10.59187 -10.47809 -10.11817 -10.04114 -9.82208 -9.33723 -8.82668 -8.42548 -7.27567 -6.88702 -6.00972 -4.06330 3.30122 3.34854 3.38026 4.39147 5.08345 5.27891 5.43978 5.48573 5.53559 5.94132 6.04799 6.14811 6.16923 6.25256 6.42305 6.45700 6.46885 6.60235 6.73589 6.83089 6.90587 6.96803 7.15201 7.40101 7.59056 7.84516 8.18040 8.31465 8.56693 8.76146 8.77077 9.05625 9.57834 11.02417 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042934 B = 0.011907 C = 0.010268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.000579 B = 2351.078266 C = 2726.347738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.494 4.494 8 H 0.064 0.936 9 C 0.219 3.781 10 H -0.005 1.005 11 C 0.069 3.931 12 N -0.830 5.830 13 N -0.510 5.510 14 C 0.059 3.941 15 C -0.112 4.112 16 C -0.117 4.117 17 C -0.115 4.115 18 C 0.062 3.938 19 H 0.260 0.740 20 H 0.063 0.937 21 H 0.022 0.978 22 H 0.306 0.694 23 H 0.342 0.658 24 H 0.008 0.992 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.422 -7.077 -0.194 7.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.532 4.532 8 H 0.082 0.918 9 C 0.112 3.888 10 H 0.013 0.987 11 C -0.063 4.063 12 N -0.358 5.358 13 N -0.235 5.235 14 C -0.070 4.070 15 C -0.150 4.150 16 C -0.155 4.155 17 C -0.153 4.153 18 C -0.067 4.067 19 H 0.070 0.930 20 H 0.081 0.919 21 H 0.041 0.959 22 H 0.114 0.886 23 H 0.155 0.845 24 H 0.026 0.974 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 3.883 -7.524 -0.233 8.471 hybrid contribution -0.732 1.702 0.497 1.918 sum 3.151 -5.822 0.264 6.626 Atomic orbital electron populations 1.69879 1.05871 1.26546 1.51318 1.24968 0.94869 0.99130 0.95607 0.86599 0.79438 0.82922 0.78682 1.20209 1.21551 1.20366 1.21114 0.93379 0.89531 1.49221 0.91838 1.19224 0.89278 0.88041 0.92245 0.98703 1.21862 0.94637 0.98289 0.91466 1.58696 1.27331 1.46318 1.03437 1.61862 1.22188 1.01353 1.38066 1.21984 0.95221 0.90520 0.99259 1.21542 0.97655 0.97281 0.98514 1.21551 0.98396 0.97269 0.98304 1.21604 0.98035 0.94696 1.01001 1.21956 0.94570 0.98834 0.91293 0.93001 0.91886 0.95944 0.88565 0.84519 0.97414 0.90778 0.91353 0.93148 0.93060 0.93094 0.91580 0.92988 0.90079 0.97068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.08 11.29 55.43 0.63 -24.45 16 2 C 0.05 1.48 5.29 -17.82 -0.09 1.38 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.49 -13.19 7.02 -34.44 -0.24 -13.43 16 8 H 0.06 1.72 6.65 -52.49 -0.35 1.37 16 9 C 0.22 5.52 1.84 -68.87 -0.13 5.39 16 10 H 0.00 -0.13 8.14 -51.93 -0.42 -0.55 16 11 C 0.07 1.64 5.63 -3.82 -0.02 1.61 16 12 N -0.83 -17.84 9.28 -10.37 -0.10 -17.94 16 13 N -0.51 -11.28 4.22 -228.08 -0.96 -12.25 16 14 C 0.06 1.16 5.15 -3.83 -0.02 1.14 16 15 C -0.11 -1.84 6.09 -26.65 -0.16 -2.00 16 16 C -0.12 -1.80 6.00 -26.61 -0.16 -1.96 16 17 C -0.12 -1.94 6.09 -26.65 -0.16 -2.10 16 18 C 0.06 1.27 5.24 -3.83 -0.02 1.25 16 19 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 20 H 0.06 1.67 5.94 -51.93 -0.31 1.36 16 21 H 0.02 0.51 6.56 -51.93 -0.34 0.17 16 22 H 0.31 5.74 9.08 -39.29 -0.36 5.39 16 23 H 0.34 7.79 8.26 -39.29 -0.32 7.47 16 24 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 25 H 0.07 1.50 6.05 -51.93 -0.31 1.19 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.79 6.24 -51.93 -0.32 1.47 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 LS Contribution 254.38 15.07 3.83 3.83 Total: -1.00 -27.38 254.38 -7.89 -35.27 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.26 Total: 8.22 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -1.01 Total: -8.70 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.43 Total: -54.64 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.38 -7.89 -35.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294098.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.174 kcal (2) G-P(sol) polarization free energy of solvation -27.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds