Wall clock time and date at job start Mon Mar 30 2020 02:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99733 * 2 1 4 4 H 1.48506 * 109.47339 * 240.00231 * 3 2 1 5 5 H 1.48497 * 109.47432 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47332 * 120.00360 * 3 2 1 7 7 C 1.37874 * 120.00343 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99925 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99963 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46844 * 299.99689 * 9 7 2 11 11 C 1.52995 * 109.47376 * 59.99705 * 9 7 2 12 12 N 1.46903 * 109.47056 * 65.76207 * 11 9 7 13 13 N 1.46897 * 109.47407 * 179.97438 * 9 7 2 14 14 C 1.46848 * 111.00443 * 183.41378 * 13 9 7 15 15 C 1.53040 * 109.52470 * 174.15867 * 14 13 9 16 16 C 1.53116 * 109.27737 * 59.18294 * 15 14 13 17 17 C 1.53119 * 109.16202 * 302.34570 * 16 15 14 18 18 C 1.46848 * 111.00014 * 59.20322 * 13 9 7 19 19 H 0.96996 * 120.00287 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47342 * 305.75934 * 11 9 7 21 21 H 1.09003 * 109.47428 * 185.75904 * 11 9 7 22 22 H 1.00904 * 111.00004 * 174.09482 * 12 11 9 23 23 H 1.00904 * 110.99890 * 298.04541 * 12 11 9 24 24 H 1.08991 * 109.46541 * 294.17895 * 14 13 9 25 25 H 1.09005 * 109.45597 * 54.14609 * 14 13 9 26 26 H 1.08997 * 109.50032 * 299.24239 * 15 14 13 27 27 H 1.08996 * 109.50103 * 179.12197 * 15 14 13 28 28 H 1.09001 * 109.52282 * 182.44155 * 16 15 14 29 29 H 1.08995 * 109.57578 * 62.27651 * 16 15 14 30 30 H 1.09006 * 109.50466 * 297.71523 * 17 16 15 31 31 H 1.09000 * 109.53949 * 177.61631 * 17 16 15 32 32 H 1.08998 * 109.46787 * 305.85907 * 18 13 9 33 33 H 1.09000 * 109.46211 * 65.83601 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 1 0.6242 -2.5574 0.8881 11 6 0.3720 -2.5794 -1.2512 12 7 1.2240 -2.6397 -2.4464 13 7 2.2058 -3.6156 -0.0027 14 6 1.5077 -4.9049 -0.0855 15 6 2.5319 -6.0327 -0.2308 16 6 3.4745 -6.0181 0.9757 17 6 4.1524 -4.6483 1.0674 18 6 3.0812 -3.5605 1.1750 19 1 -0.4850 0.8400 0.0004 20 1 -0.2660 -1.6971 -1.3040 21 1 -0.2486 -3.4741 -1.2020 22 1 0.6715 -2.7898 -3.2772 23 1 1.7865 -1.8063 -2.5320 24 1 0.9228 -5.0601 0.8210 25 1 0.8438 -4.9035 -0.9501 26 1 3.1079 -5.8856 -1.1444 27 1 2.0141 -6.9908 -0.2766 28 1 4.2323 -6.7923 0.8553 29 1 2.9051 -6.2043 1.8863 30 1 4.7540 -4.4794 0.1741 31 1 4.7929 -4.6167 1.9487 32 1 3.5603 -2.5828 1.2260 33 1 2.4890 -3.7222 2.0756 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261294098.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:35 Heat of formation + Delta-G solvation = -24.658425 kcal Electronic energy + Delta-G solvation = -13543.982732 eV Core-core repulsion = 11410.138156 eV Total energy + Delta-G solvation = -2133.844576 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.83888 -36.57960 -33.94234 -33.03829 -31.54425 -28.86441 -26.31661 -24.56543 -23.47425 -21.34556 -20.32754 -18.19109 -17.38925 -16.49708 -16.14770 -15.51622 -15.11977 -14.80769 -14.62940 -14.35703 -13.88656 -13.43246 -13.18917 -12.99551 -12.61434 -12.52357 -12.33295 -12.04066 -11.88295 -11.51205 -11.39445 -10.87737 -10.76718 -10.46400 -9.12507 -8.70828 -8.08013 -6.20890 1.42815 1.43101 1.51079 2.41818 3.15884 3.45210 4.08441 4.12853 4.17396 4.26826 4.47546 4.61148 4.69008 4.77924 4.83951 4.98458 5.07954 5.14186 5.19982 5.25784 5.33593 5.35862 5.40153 5.58577 5.64933 5.76379 6.22496 6.46435 6.64681 6.91103 6.95201 7.09304 7.47501 8.93613 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042934 B = 0.011907 C = 0.010268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.000579 B = 2351.078266 C = 2726.347738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.502 4.502 8 H 0.057 0.943 9 C 0.222 3.778 10 H -0.050 1.050 11 C 0.081 3.919 12 N -0.820 5.820 13 N -0.513 5.513 14 C 0.056 3.944 15 C -0.105 4.105 16 C -0.114 4.114 17 C -0.108 4.108 18 C 0.060 3.940 19 H 0.260 0.740 20 H 0.035 0.965 21 H 0.030 0.970 22 H 0.325 0.675 23 H 0.336 0.664 24 H -0.001 1.001 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.058 0.942 33 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.791 -8.083 -0.573 9.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.114 3.886 10 H -0.032 1.032 11 C -0.051 4.051 12 N -0.348 5.348 13 N -0.237 5.237 14 C -0.072 4.072 15 C -0.143 4.143 16 C -0.152 4.152 17 C -0.146 4.146 18 C -0.069 4.069 19 H 0.069 0.931 20 H 0.054 0.946 21 H 0.048 0.952 22 H 0.135 0.865 23 H 0.148 0.852 24 H 0.017 0.983 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 5.260 -8.555 -0.624 10.062 hybrid contribution -1.187 1.981 0.629 2.394 sum 4.073 -6.574 0.005 7.733 Atomic orbital electron populations 1.70019 1.07146 1.27153 1.51899 1.25674 0.95576 1.02186 0.95221 0.85617 0.78217 0.78977 0.78844 1.19328 1.21419 1.20138 1.21253 0.93063 0.90504 1.49229 0.92508 1.19058 0.89355 0.89153 0.91018 1.03242 1.21590 0.94257 0.97320 0.91922 1.58596 1.27032 1.45687 1.03518 1.61872 1.21564 1.01569 1.38740 1.22076 0.96172 0.90564 0.98410 1.21511 0.97017 0.96818 0.98952 1.21552 0.98831 0.96976 0.97793 1.21556 0.96874 0.94121 1.02011 1.22000 0.95130 0.99488 0.90261 0.93112 0.94649 0.95177 0.86493 0.85180 0.98287 0.91619 0.91676 0.90454 0.89870 0.92836 0.91790 0.90685 0.92312 0.98284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.60 11.29 21.45 0.24 -52.35 16 2 C 0.01 0.63 5.29 84.65 0.45 1.08 16 3 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.50 -27.29 7.02 25.60 0.18 -27.11 16 8 H 0.06 3.12 6.65 -2.91 -0.02 3.10 16 9 C 0.22 11.49 1.84 44.17 0.08 11.57 16 10 H -0.05 -2.96 8.14 -2.38 -0.02 -2.97 16 11 C 0.08 3.91 5.63 86.30 0.49 4.39 16 12 N -0.82 -34.81 9.28 -186.71 -1.73 -36.54 16 13 N -0.51 -22.76 4.22 -875.52 -3.70 -26.46 16 14 C 0.06 2.16 5.15 86.33 0.44 2.61 16 15 C -0.11 -3.15 6.09 30.65 0.19 -2.97 16 16 C -0.11 -3.10 6.00 30.67 0.18 -2.91 16 17 C -0.11 -3.37 6.09 30.65 0.19 -3.19 16 18 C 0.06 2.45 5.24 86.33 0.45 2.91 16 19 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 20 H 0.04 1.92 5.94 -2.39 -0.01 1.91 16 21 H 0.03 1.38 6.56 -2.39 -0.02 1.37 16 22 H 0.32 11.80 9.08 -89.69 -0.81 10.99 16 23 H 0.34 15.17 8.26 -89.69 -0.74 14.43 16 24 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 25 H 0.07 2.62 6.05 -2.38 -0.01 2.60 16 26 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 2.64 6.24 -2.39 -0.01 2.62 16 33 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: -1.00 -59.00 254.38 -0.97 -59.97 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -0.46 Total: 23.63 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 2.65 Total: -13.62 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -5.19 Total: -115.36 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -59.00 -0.97 -59.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294098.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.307 kcal (2) G-P(sol) polarization free energy of solvation -58.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds