Wall clock time and date at job start Mon Mar 30 2020 02:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47365 * 2 1 4 4 C 1.42897 * 114.00158 * 183.97560 * 3 2 1 5 5 C 1.50706 * 109.47283 * 58.01790 * 4 3 2 6 6 H 1.07996 * 119.99512 * 243.70279 * 5 4 3 7 7 C 1.37879 * 120.00024 * 63.69386 * 5 4 3 8 8 N 1.31513 * 119.99878 * 173.55213 * 7 5 4 9 9 Si 1.86799 * 119.99966 * 353.55765 * 7 5 4 10 10 H 1.48497 * 109.47178 * 90.96216 * 9 7 5 11 11 H 1.48501 * 109.47157 * 210.96454 * 9 7 5 12 12 H 1.48502 * 109.47308 * 330.95943 * 9 7 5 13 13 C 1.53000 * 109.47344 * 298.01443 * 4 3 2 14 14 C 1.52998 * 109.46890 * 300.00273 * 13 4 3 15 15 C 1.52998 * 109.47084 * 299.99453 * 14 13 4 16 16 C 1.53000 * 109.46810 * 60.00498 * 15 14 13 17 17 C 1.52993 * 109.47138 * 299.99385 * 16 15 14 18 18 H 1.08998 * 109.47075 * 179.97438 * 1 2 3 19 19 H 1.08999 * 109.46698 * 299.99711 * 1 2 3 20 20 H 1.08997 * 109.47108 * 59.99729 * 1 2 3 21 21 H 1.09000 * 109.47619 * 120.00268 * 2 1 3 22 22 H 1.09008 * 109.47127 * 239.99857 * 2 1 3 23 23 H 0.97000 * 119.99806 * 180.02562 * 8 7 5 24 24 H 1.09006 * 109.46620 * 59.99997 * 13 4 3 25 25 H 1.08996 * 109.47345 * 180.02562 * 13 4 3 26 26 H 1.09007 * 109.46980 * 179.97438 * 14 13 4 27 27 H 1.08996 * 109.47231 * 59.99802 * 14 13 4 28 28 H 1.08996 * 109.47371 * 300.00263 * 15 14 13 29 29 H 1.09001 * 109.47179 * 180.02562 * 15 14 13 30 30 H 1.09003 * 109.46856 * 179.97438 * 16 15 14 31 31 H 1.08996 * 109.47345 * 59.99749 * 16 15 14 32 32 H 1.08996 * 109.47300 * 300.00392 * 17 16 15 33 33 H 1.09002 * 109.47571 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4279 1.4611 -0.0905 5 6 3.9076 0.7790 -1.3458 6 1 4.5546 -0.0831 -1.2784 7 6 3.5204 1.2555 -2.5804 8 7 4.0376 0.7421 -3.6751 9 14 2.2613 2.6303 -2.6979 10 1 2.9592 3.9410 -2.7101 11 1 1.4754 2.4763 -3.9485 12 1 1.3481 2.5666 -1.5285 13 6 4.0714 0.7971 1.1285 14 6 3.5844 1.4896 2.4028 15 6 3.9760 2.9681 2.3614 16 6 3.3325 3.6321 1.1424 17 6 3.8196 2.9396 -0.1320 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 1.8934 -0.5139 0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 3.7654 1.0776 -4.5436 24 1 3.7924 -0.2562 1.1580 25 1 5.1557 0.8844 1.0597 26 1 4.0425 1.0163 3.2714 27 1 2.5001 1.4028 2.4719 28 1 5.0603 3.0549 2.2924 29 1 3.6294 3.4614 3.2695 30 1 3.6112 4.6855 1.1131 31 1 2.2482 3.5452 1.2114 32 1 4.9039 3.0265 -0.2010 33 1 3.3608 3.4123 -1.0004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261294385.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:43 Heat of formation + Delta-G solvation = -79.994907 kcal Electronic energy + Delta-G solvation = -13982.387739 eV Core-core repulsion = 11813.850841 eV Total energy + Delta-G solvation = -2168.536897 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.40850 -36.69288 -34.68975 -32.31452 -31.55544 -30.50037 -26.77007 -24.03537 -23.15507 -22.14143 -20.29718 -18.86025 -17.38214 -16.57426 -16.20690 -15.63166 -15.19159 -14.95458 -14.44593 -14.30319 -13.70650 -13.43718 -13.30921 -12.82383 -12.70112 -12.55888 -12.15707 -12.12223 -11.96609 -11.70477 -11.50762 -11.27274 -10.95078 -10.64323 -10.40936 -9.60278 -8.35234 -6.44204 1.31156 1.40490 1.68421 2.39007 2.97436 3.39046 4.04233 4.06674 4.16867 4.37309 4.51339 4.60286 4.63468 4.69774 4.77041 4.81427 4.85921 4.92253 4.97119 5.19504 5.25551 5.28139 5.32463 5.36895 5.43514 5.47036 5.62439 5.68501 5.78605 6.11580 6.64548 6.93434 7.32961 8.79598 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030414 B = 0.018483 C = 0.015560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.408311 B = 1514.551801 C = 1799.023543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.060 3.940 3 O -0.394 6.394 4 C 0.206 3.794 5 C -0.540 4.540 6 H 0.030 0.970 7 C 0.033 3.967 8 N -0.941 5.941 9 Si 0.926 3.074 10 H -0.281 1.281 11 H -0.314 1.314 12 H -0.198 1.198 13 C -0.124 4.124 14 C -0.109 4.109 15 C -0.109 4.109 16 C -0.114 4.114 17 C -0.109 4.109 18 H 0.083 0.917 19 H 0.068 0.932 20 H 0.043 0.957 21 H 0.043 0.957 22 H 0.024 0.976 23 H 0.264 0.736 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.706 3.626 11.761 13.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.017 4.017 3 O -0.315 6.315 4 C 0.168 3.832 5 C -0.578 4.578 6 H 0.049 0.951 7 C -0.166 4.166 8 N -0.581 5.581 9 Si 0.754 3.246 10 H -0.209 1.209 11 H -0.244 1.244 12 H -0.120 1.120 13 C -0.162 4.162 14 C -0.146 4.146 15 C -0.146 4.146 16 C -0.152 4.152 17 C -0.146 4.146 18 H 0.102 0.898 19 H 0.087 0.913 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.042 0.958 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.822 3.775 11.633 13.146 hybrid contribution 0.155 -0.084 -1.170 1.183 sum -4.667 3.691 10.463 12.037 Atomic orbital electron populations 1.21735 0.93289 1.02624 1.02101 1.22167 0.94998 0.85503 0.99053 1.87870 1.23494 1.25876 1.94253 1.19321 0.79055 0.92879 0.91962 1.21654 1.30333 1.14296 0.91499 0.95143 1.25729 0.97033 0.98615 0.95179 1.70089 1.44481 1.44943 0.98594 0.86400 0.81426 0.78681 0.78123 1.20887 1.24373 1.12026 1.21876 0.99750 0.98958 0.95647 1.21449 1.01070 0.95880 0.96216 1.21472 1.00314 0.95219 0.97627 1.21520 1.00709 0.98846 0.94097 1.21736 1.00183 0.95025 0.97639 0.89842 0.91299 0.93739 0.93882 0.95809 0.92743 0.93512 0.92915 0.90999 0.92132 0.92101 0.90075 0.91315 0.92110 0.91939 0.94668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 10.28 71.98 0.74 -3.74 16 2 C 0.06 2.40 5.94 71.98 0.43 2.83 16 3 O -0.39 -17.44 5.50 -148.98 -0.82 -18.26 16 4 C 0.21 9.45 0.27 -11.54 0.00 9.45 16 5 C -0.54 -30.74 7.23 25.60 0.19 -30.56 16 6 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 7 C 0.03 1.97 5.41 84.66 0.46 2.43 16 8 N -0.94 -59.78 13.96 21.45 0.30 -59.48 16 9 Si 0.93 46.57 24.08 68.60 1.65 48.22 16 10 H -0.28 -13.74 6.73 99.48 0.67 -13.07 16 11 H -0.31 -16.07 7.11 99.48 0.71 -15.37 16 12 H -0.20 -9.38 5.29 99.48 0.53 -8.85 16 13 C -0.12 -4.90 4.35 30.59 0.13 -4.77 16 14 C -0.11 -3.34 5.78 30.59 0.18 -3.16 16 15 C -0.11 -3.07 5.92 30.59 0.18 -2.89 16 16 C -0.11 -3.79 5.78 30.59 0.18 -3.61 16 17 C -0.11 -4.63 4.46 30.59 0.14 -4.49 16 18 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 19 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 20 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.04 1.60 6.66 -2.39 -0.02 1.58 16 22 H 0.02 1.12 6.96 -2.38 -0.02 1.11 16 23 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 24 H 0.05 1.87 6.67 -2.38 -0.02 1.85 16 25 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 26 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.06 1.90 7.68 -2.39 -0.02 1.88 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 2.08 7.68 -2.39 -0.02 2.06 16 32 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.04 1.62 3.21 -2.39 -0.01 1.61 16 Total: -1.00 -65.25 246.52 4.59 -60.67 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 0.84 Total: 7.36 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 2.61 Total: -38.51 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 0.30 Total: -59.48 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.82 Total: -18.26 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.65 Total: 48.22 kcal Total: -65.25 4.59 -60.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294385.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.329 kcal (2) G-P(sol) polarization free energy of solvation -65.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds