Wall clock time and date at job start Mon Mar 30 2020 02:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99876 * 2 1 4 4 H 1.48501 * 109.47215 * 240.00166 * 3 2 1 5 5 H 1.48505 * 109.47120 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46874 * 120.00009 * 3 2 1 7 7 C 1.37874 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99822 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00248 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47610 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.67719 * 55.31545 * 10 9 7 12 12 C 1.54513 * 109.56999 * 295.00146 * 10 9 7 13 13 C 1.45864 * 111.58959 * 162.99870 * 12 10 9 14 14 N 1.47801 * 112.92690 * 61.32563 * 13 12 10 15 15 C 1.44269 * 109.45574 * 276.74544 * 14 13 12 16 16 C 1.54070 * 111.91825 * 96.47375 * 15 14 13 17 17 C 1.50459 * 109.57813 * 175.63750 * 10 9 7 18 18 H 1.08995 * 108.77232 * 91.16344 * 17 10 9 19 19 N 1.46900 * 108.76665 * 332.87697 * 17 10 9 20 20 H 0.96994 * 120.00140 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.46981 * 59.99853 * 9 7 2 22 22 H 1.08998 * 109.47193 * 300.00333 * 9 7 2 23 23 H 1.08991 * 109.05570 * 42.45614 * 12 10 9 24 24 H 1.08998 * 109.05623 * 283.53617 * 12 10 9 25 25 H 1.09003 * 108.79489 * 300.43687 * 13 12 10 26 26 H 1.09005 * 108.70330 * 182.15303 * 13 12 10 27 27 H 1.00891 * 111.00109 * 153.87313 * 14 13 12 28 28 H 1.09002 * 108.97853 * 217.07780 * 15 14 13 29 29 H 1.09000 * 108.97908 * 335.87120 * 15 14 13 30 30 H 1.08999 * 108.91715 * 79.59084 * 16 15 14 31 31 H 1.08994 * 108.91623 * 198.14381 * 16 15 14 32 32 H 1.00909 * 110.99719 * 180.02562 * 19 17 10 33 33 H 1.00905 * 111.00457 * 303.95188 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9278 -3.5615 0.8434 12 6 3.0494 -3.6556 -1.3200 13 6 4.2564 -4.4681 -1.2170 14 7 3.9707 -5.8905 -0.9349 15 6 3.7774 -6.0697 0.4835 16 6 2.2854 -6.0508 0.8676 17 6 1.4986 -4.9638 0.1073 18 1 1.2830 -5.3287 -0.8969 19 7 0.2284 -4.7236 0.8050 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 3.3300 -2.6304 -1.5607 24 1 2.4229 -4.0492 -2.1204 25 1 4.8805 -4.0700 -0.4168 26 1 4.8050 -4.3997 -2.1564 27 1 4.7125 -6.4830 -1.2764 28 1 4.2082 -7.0254 0.7821 29 1 4.2905 -5.2684 1.0153 30 1 1.8505 -7.0249 0.6436 31 1 2.1984 -5.8645 1.9379 32 1 -0.3012 -5.5777 0.8964 33 1 0.3856 -4.2978 1.7062 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261294607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:27 Heat of formation + Delta-G solvation = -6.476151 kcal Electronic energy + Delta-G solvation = -13367.547738 eV Core-core repulsion = 11234.491604 eV Total energy + Delta-G solvation = -2133.056134 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.81561 -34.88955 -33.24022 -31.85782 -29.22625 -27.86482 -24.83586 -23.23972 -21.52127 -20.13997 -18.54686 -16.43798 -16.21483 -15.14763 -14.69267 -14.40475 -14.20260 -13.32967 -13.10635 -12.48680 -12.12511 -11.94646 -11.67285 -11.24472 -10.88424 -10.74223 -10.48021 -10.41848 -10.15577 -9.93420 -9.36069 -9.05899 -8.75632 -8.32359 -8.14058 -7.78320 -5.83451 -3.84548 3.39270 3.44205 3.45924 4.44358 4.56607 5.13467 5.17598 5.37953 5.49993 5.52253 5.67796 5.76054 5.87003 6.01180 6.11436 6.20127 6.24509 6.50863 6.73136 6.82996 6.96458 7.21163 7.28212 7.44348 7.62215 7.92021 7.94665 8.12774 8.18646 8.30152 8.64719 9.25369 9.77076 11.26967 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044064 B = 0.010384 C = 0.008952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.290232 B = 2695.830629 C = 3126.887222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.883 3.117 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.518 4.518 8 H 0.049 0.951 9 C 0.045 3.955 10 C -0.070 4.070 11 H 0.045 0.955 12 C -0.111 4.111 13 C 0.063 3.937 14 N -0.682 5.682 15 C 0.065 3.935 16 C -0.143 4.143 17 C 0.107 3.893 18 H 0.073 0.927 19 N -0.833 5.833 20 H 0.258 0.742 21 H 0.017 0.983 22 H 0.029 0.971 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.030 0.970 26 H 0.056 0.944 27 H 0.335 0.665 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.320 0.680 33 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.705 -11.006 0.614 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.712 3.288 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.557 4.557 8 H 0.067 0.933 9 C 0.008 3.992 10 C -0.089 4.089 11 H 0.063 0.937 12 C -0.149 4.149 13 C -0.066 4.066 14 N -0.312 5.312 15 C -0.066 4.066 16 C -0.184 4.184 17 C -0.005 4.005 18 H 0.091 0.909 19 N -0.361 5.361 20 H 0.067 0.933 21 H 0.035 0.965 22 H 0.047 0.953 23 H 0.099 0.901 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.131 0.869 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.679 -10.341 -0.147 11.798 hybrid contribution 1.809 0.322 1.110 2.146 sum 7.487 -10.019 0.963 12.545 Atomic orbital electron populations 1.69981 1.05841 1.26168 1.51140 1.24991 0.94736 0.98769 0.95884 0.86814 0.79669 0.83994 0.78370 1.20459 1.21447 1.20551 1.21366 0.92693 0.91683 1.49928 0.93254 1.18928 0.93003 0.89117 0.98191 1.20999 0.97430 0.94895 0.95584 0.93680 1.20606 0.95895 0.99683 0.98700 1.20987 0.98354 0.87588 0.99622 1.59950 1.48834 1.07200 1.15235 1.21609 0.96711 0.99529 0.88744 1.22874 0.96019 1.00232 0.99247 1.21263 0.87910 0.94144 0.97156 0.90884 1.59267 1.20090 1.29876 1.26831 0.93261 0.96500 0.95293 0.90113 0.92474 0.95190 0.92535 0.84849 0.93158 0.94279 0.92994 0.93044 0.86891 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.88 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.71 8.16 -34.44 -0.28 -14.99 16 8 H 0.05 1.36 7.22 -52.48 -0.38 0.98 16 9 C 0.04 1.18 3.82 -27.88 -0.11 1.07 16 10 C -0.07 -1.46 1.68 -91.09 -0.15 -1.62 16 11 H 0.04 0.96 7.15 -51.93 -0.37 0.59 16 12 C -0.11 -2.13 4.85 -29.31 -0.14 -2.27 16 13 C 0.06 0.97 5.80 -6.70 -0.04 0.93 16 14 N -0.68 -9.48 6.40 -118.14 -0.76 -10.24 16 15 C 0.07 0.89 5.89 -4.67 -0.03 0.87 16 16 C -0.14 -2.11 5.67 -25.53 -0.14 -2.26 16 17 C 0.11 1.93 2.67 -68.34 -0.18 1.75 16 18 H 0.07 1.42 7.38 -51.93 -0.38 1.04 16 19 N -0.83 -15.05 7.64 -5.20 -0.04 -15.09 16 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.03 0.80 6.37 -51.93 -0.33 0.47 16 23 H 0.08 1.71 6.66 -51.93 -0.35 1.37 16 24 H 0.06 1.12 7.59 -51.93 -0.39 0.73 16 25 H 0.03 0.47 7.24 -51.93 -0.38 0.10 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.33 3.77 8.89 -39.30 -0.35 3.42 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.58 6.50 -51.93 -0.34 0.24 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.32 4.86 8.99 -39.29 -0.35 4.50 16 33 H 0.34 6.12 8.04 -39.29 -0.32 5.80 16 LS Contribution 253.22 15.07 3.82 3.82 Total: -1.00 -30.55 253.22 -7.62 -38.18 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.18 Total: 7.97 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -1.17 Total: -14.96 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.06 Total: -51.99 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.55 -7.62 -38.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.701 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds