Wall clock time and date at job start Mon Mar 30 2020 02:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99876 * 2 1 4 4 H 1.48501 * 109.47215 * 240.00166 * 3 2 1 5 5 H 1.48505 * 109.47120 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46874 * 120.00009 * 3 2 1 7 7 C 1.37874 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99822 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00248 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47610 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.67719 * 55.31545 * 10 9 7 12 12 C 1.54513 * 109.56999 * 295.00146 * 10 9 7 13 13 C 1.45864 * 111.58959 * 162.99870 * 12 10 9 14 14 N 1.47801 * 112.92690 * 61.32563 * 13 12 10 15 15 C 1.44269 * 109.45574 * 276.74544 * 14 13 12 16 16 C 1.54070 * 111.91825 * 96.47375 * 15 14 13 17 17 C 1.50459 * 109.57813 * 175.63750 * 10 9 7 18 18 H 1.08995 * 108.77232 * 91.16344 * 17 10 9 19 19 N 1.46900 * 108.76665 * 332.87697 * 17 10 9 20 20 H 0.96994 * 120.00140 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.46981 * 59.99853 * 9 7 2 22 22 H 1.08998 * 109.47193 * 300.00333 * 9 7 2 23 23 H 1.08991 * 109.05570 * 42.45614 * 12 10 9 24 24 H 1.08998 * 109.05623 * 283.53617 * 12 10 9 25 25 H 1.09003 * 108.79489 * 300.43687 * 13 12 10 26 26 H 1.09005 * 108.70330 * 182.15303 * 13 12 10 27 27 H 1.00891 * 111.00109 * 153.87313 * 14 13 12 28 28 H 1.09002 * 108.97853 * 217.07780 * 15 14 13 29 29 H 1.09000 * 108.97908 * 335.87120 * 15 14 13 30 30 H 1.08999 * 108.91715 * 79.59084 * 16 15 14 31 31 H 1.08994 * 108.91623 * 198.14381 * 16 15 14 32 32 H 1.00909 * 110.99719 * 180.02562 * 19 17 10 33 33 H 1.00905 * 111.00457 * 303.95188 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9278 -3.5615 0.8434 12 6 3.0494 -3.6556 -1.3200 13 6 4.2564 -4.4681 -1.2170 14 7 3.9707 -5.8905 -0.9349 15 6 3.7774 -6.0697 0.4835 16 6 2.2854 -6.0508 0.8676 17 6 1.4986 -4.9638 0.1073 18 1 1.2830 -5.3287 -0.8969 19 7 0.2284 -4.7236 0.8050 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 3.3300 -2.6304 -1.5607 24 1 2.4229 -4.0492 -2.1204 25 1 4.8805 -4.0700 -0.4168 26 1 4.8050 -4.3997 -2.1564 27 1 4.7125 -6.4830 -1.2764 28 1 4.2082 -7.0254 0.7821 29 1 4.2905 -5.2684 1.0153 30 1 1.8505 -7.0249 0.6436 31 1 2.1984 -5.8645 1.9379 32 1 -0.3012 -5.5777 0.8964 33 1 0.3856 -4.2978 1.7062 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261294607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:26 Heat of formation + Delta-G solvation = -29.996833 kcal Electronic energy + Delta-G solvation = -13368.567671 eV Core-core repulsion = 11234.491604 eV Total energy + Delta-G solvation = -2134.076067 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.22627 -36.31805 -35.07305 -33.63132 -30.69761 -29.60415 -26.63797 -24.65782 -23.27564 -21.52253 -20.11033 -18.46121 -17.51751 -16.72425 -16.45343 -16.02870 -15.47898 -14.80488 -14.62349 -14.09108 -13.91189 -13.54171 -13.09504 -13.02323 -12.70776 -12.52078 -12.29176 -11.78724 -11.71214 -11.60987 -11.16534 -10.91047 -10.75051 -10.39996 -9.51907 -9.13479 -8.08045 -6.17211 1.40322 1.43035 1.50548 2.45814 3.23003 3.33284 3.81478 3.96192 4.07170 4.26430 4.41526 4.44879 4.65324 4.67933 4.75831 4.83644 4.95177 5.08571 5.23772 5.33537 5.43139 5.51396 5.53239 5.71746 6.03246 6.08202 6.15369 6.40297 6.48477 6.69816 6.79820 7.06240 7.49439 9.02719 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044064 B = 0.010384 C = 0.008952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.290232 B = 2695.830629 C = 3126.887222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.532 4.532 8 H 0.055 0.945 9 C 0.056 3.944 10 C -0.062 4.062 11 H 0.041 0.959 12 C -0.103 4.103 13 C 0.068 3.932 14 N -0.684 5.684 15 C 0.064 3.936 16 C -0.136 4.136 17 C 0.112 3.888 18 H 0.058 0.942 19 N -0.852 5.852 20 H 0.259 0.741 21 H -0.025 1.025 22 H 0.007 0.993 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.030 0.970 26 H 0.078 0.922 27 H 0.355 0.645 28 H 0.082 0.918 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.337 0.663 33 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.550 -11.933 0.835 14.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.571 4.571 8 H 0.073 0.927 9 C 0.019 3.981 10 C -0.081 4.081 11 H 0.060 0.940 12 C -0.141 4.141 13 C -0.061 4.061 14 N -0.316 5.316 15 C -0.067 4.067 16 C -0.176 4.176 17 C 0.001 3.999 18 H 0.077 0.923 19 N -0.381 5.381 20 H 0.068 0.932 21 H -0.006 1.006 22 H 0.026 0.974 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.096 0.904 27 H 0.174 0.826 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.150 0.850 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.546 -11.302 0.068 13.590 hybrid contribution 1.170 0.585 1.024 1.662 sum 8.716 -10.717 1.093 13.857 Atomic orbital electron populations 1.70135 1.07648 1.27175 1.52273 1.25909 0.95632 1.02885 0.95467 0.85663 0.78359 0.78982 0.78982 1.19388 1.21172 1.19365 1.21771 0.93139 0.92815 1.49351 0.92713 1.18725 0.93281 0.91062 0.95048 1.20832 0.96450 0.94384 0.96445 0.94006 1.20496 0.97245 0.99158 0.97238 1.20789 0.96175 0.88194 1.00899 1.59795 1.49941 1.06296 1.15586 1.21642 0.95703 1.00938 0.88462 1.22764 0.96574 0.99283 0.98997 1.21087 0.88110 0.93581 0.97133 0.92346 1.59156 1.20802 1.31310 1.26845 0.93247 1.00625 0.97448 0.92659 0.93473 0.95151 0.90365 0.82556 0.89956 0.95223 0.91362 0.92405 0.84965 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.65 13.29 21.45 0.28 -58.36 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 3 Si 0.95 45.42 29.54 68.60 2.03 47.44 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.53 -30.83 8.16 25.60 0.21 -30.63 16 8 H 0.05 3.04 7.22 -2.91 -0.02 3.02 16 9 C 0.06 3.06 3.82 29.85 0.11 3.17 16 10 C -0.06 -2.62 1.68 -11.10 -0.02 -2.64 16 11 H 0.04 1.78 7.15 -2.39 -0.02 1.76 16 12 C -0.10 -3.96 4.85 28.92 0.14 -3.82 16 13 C 0.07 1.98 5.80 83.94 0.49 2.46 16 14 N -0.68 -16.97 6.40 -527.69 -3.38 -20.35 16 15 C 0.06 1.54 5.89 87.16 0.51 2.05 16 16 C -0.14 -3.69 5.67 31.37 0.18 -3.51 16 17 C 0.11 4.01 2.67 44.51 0.12 4.13 16 18 H 0.06 2.25 7.38 -2.39 -0.02 2.24 16 19 N -0.85 -31.04 7.64 -170.37 -1.30 -32.34 16 20 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 21 H -0.02 -1.53 8.14 -2.38 -0.02 -1.55 16 22 H 0.01 0.42 6.37 -2.39 -0.02 0.40 16 23 H 0.05 2.38 6.66 -2.39 -0.02 2.36 16 24 H 0.05 1.87 7.59 -2.39 -0.02 1.85 16 25 H 0.03 0.89 7.24 -2.39 -0.02 0.88 16 26 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.36 6.60 8.89 -89.70 -0.80 5.81 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.03 0.79 6.50 -2.39 -0.02 0.77 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 32 H 0.34 10.07 8.99 -89.69 -0.81 9.27 16 33 H 0.34 12.38 8.04 -89.69 -0.72 11.66 16 Total: -1.00 -66.78 253.22 -1.37 -68.16 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -1.21 Total: 23.88 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 2.20 Total: -28.42 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -4.40 Total: -111.06 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -66.78 -1.37 -68.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.159 kcal (2) G-P(sol) polarization free energy of solvation -66.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds