Wall clock time and date at job start Mon Mar 30 2020 02:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 113.99768 * 2 1 4 4 C 1.52997 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47497 * 304.99699 * 4 3 2 6 6 C 1.53002 * 109.47415 * 65.00051 * 4 3 2 7 7 C 1.53000 * 109.47233 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47060 * 299.99657 * 7 6 4 9 9 C 1.52999 * 109.47317 * 59.99960 * 8 7 6 10 10 C 1.52997 * 109.47232 * 184.99924 * 4 3 2 11 11 H 1.09002 * 109.47153 * 299.99992 * 10 4 3 12 12 C 1.50699 * 109.47078 * 59.99785 * 10 4 3 13 13 H 1.07999 * 120.00019 * 0.02562 * 12 10 4 14 14 C 1.37877 * 120.00129 * 179.97438 * 12 10 4 15 15 N 1.31516 * 120.00113 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00167 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47319 * 59.99928 * 16 14 12 18 18 H 1.48503 * 109.47266 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46734 * 299.99975 * 16 14 12 20 20 H 1.09003 * 109.47364 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47560 * 300.00019 * 1 2 3 22 22 H 1.08998 * 109.47296 * 59.99978 * 1 2 3 23 23 H 1.09002 * 109.47048 * 60.00255 * 3 2 1 24 24 H 1.09001 * 109.47280 * 299.99579 * 3 2 1 25 25 H 1.08992 * 109.47063 * 59.99950 * 6 4 3 26 26 H 1.09004 * 109.46733 * 299.99664 * 6 4 3 27 27 H 1.09002 * 109.47398 * 59.99826 * 7 6 4 28 28 H 1.09001 * 109.47194 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47853 * 180.02562 * 8 7 6 30 30 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 31 31 H 1.09000 * 109.47486 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.46716 * 60.00091 * 9 8 7 33 33 H 0.96999 * 120.00366 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 1 3.8514 0.5683 0.8409 6 6 3.9951 0.5370 -1.3083 7 6 5.5203 0.4157 -1.3086 8 6 6.1427 1.8076 -1.1827 9 6 5.6829 2.4555 0.1249 10 6 4.1572 2.5769 0.1251 11 1 3.8412 3.1934 -0.7165 12 6 3.7044 3.2150 1.4130 13 1 3.0398 2.6808 2.0758 14 6 4.1393 4.4804 1.7457 15 7 4.9489 5.1308 0.9389 16 14 3.5785 5.2710 3.3426 17 1 4.0089 4.4308 4.4888 18 1 4.1820 6.6223 3.4646 19 1 2.0981 5.3886 3.3434 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.6885 1.8464 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 3.6792 1.1534 -2.1498 26 1 3.5521 -0.4549 -1.3978 27 1 5.8360 -0.2010 -0.4671 28 1 5.8479 -0.0454 -2.2404 29 1 7.2292 1.7214 -1.1833 30 1 5.8270 2.4243 -2.0242 31 1 6.1259 3.4474 0.2145 32 1 5.9986 1.8388 0.9665 33 1 5.2546 6.0211 1.1727 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261297206.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:25 Heat of formation + Delta-G solvation = -79.523197 kcal Electronic energy + Delta-G solvation = -13330.095389 eV Core-core repulsion = 11161.578947 eV Total energy + Delta-G solvation = -2168.516442 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.24104 -36.52009 -32.84150 -31.03528 -29.32706 -26.62035 -24.89974 -24.02371 -21.03306 -20.15278 -18.63583 -16.37725 -15.66179 -15.16282 -14.77059 -14.39714 -13.58747 -13.28560 -12.91384 -12.60120 -12.13815 -11.74945 -11.29886 -11.03624 -10.94682 -10.68024 -10.59330 -10.34019 -10.00688 -9.97755 -9.78268 -9.35600 -9.06452 -8.77580 -8.51879 -8.24962 -5.95769 -4.02203 3.32238 3.37236 3.39899 4.40498 4.45090 5.33123 5.55259 5.64879 5.65814 5.73886 5.78900 5.89650 6.04678 6.23464 6.38069 6.41444 6.48496 6.62041 6.66939 6.76848 6.81764 6.91821 7.09182 7.19225 7.33636 7.52310 7.78387 7.82182 8.04780 8.18345 8.48697 9.00879 9.62062 11.09329 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.026305 B = 0.014010 C = 0.009594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.191698 B = 1998.061459 C = 2917.803450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.400 6.400 3 C 0.070 3.930 4 C -0.073 4.073 5 H 0.062 0.938 6 C -0.108 4.108 7 C -0.114 4.114 8 C -0.120 4.120 9 C -0.108 4.108 10 C 0.058 3.942 11 H 0.026 0.974 12 C -0.514 4.514 13 H 0.055 0.945 14 C 0.062 3.938 15 N -0.889 5.889 16 Si 0.887 3.113 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 H 0.075 0.925 21 H 0.036 0.964 22 H 0.034 0.966 23 H 0.061 0.939 24 H 0.038 0.962 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.033 0.967 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 -6.537 -2.928 7.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.319 6.319 3 C -0.005 4.005 4 C -0.091 4.091 5 H 0.081 0.919 6 C -0.146 4.146 7 C -0.151 4.151 8 C -0.158 4.158 9 C -0.146 4.146 10 C 0.039 3.961 11 H 0.044 0.956 12 C -0.552 4.552 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.715 3.285 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 H 0.094 0.906 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.080 0.920 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.052 0.948 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.091 -6.517 -2.944 7.791 hybrid contribution -0.520 0.769 0.881 1.280 sum -3.612 -5.749 -2.063 7.096 Atomic orbital electron populations 1.22607 0.82649 1.01494 0.99554 1.87835 1.18375 1.30269 1.95420 1.22756 0.94918 0.82474 1.00367 1.21235 0.91477 1.00018 0.96404 0.91917 1.21528 0.95121 0.99737 0.98200 1.21508 0.96037 0.97765 0.99834 1.21638 0.98043 0.95565 1.00526 1.21595 0.98918 1.01288 0.92842 1.18624 0.91624 0.88903 0.96918 0.95637 1.21222 1.28449 1.00242 1.05333 0.92672 1.24956 0.95076 0.97223 0.96617 1.69871 1.33513 1.12877 1.36557 0.86737 0.78885 0.78483 0.84357 1.20311 1.21356 1.20409 0.90650 0.94553 0.94767 0.92035 0.94399 0.93101 0.92974 0.92824 0.93794 0.94127 0.93111 0.89060 0.94811 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.40 -7.49 10.24 -35.23 -0.36 -7.85 16 3 C 0.07 1.43 5.15 37.16 0.19 1.62 16 4 C -0.07 -1.56 1.91 -90.62 -0.17 -1.74 16 5 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 6 C -0.11 -2.05 5.10 -26.73 -0.14 -2.19 16 7 C -0.11 -2.05 5.92 -26.73 -0.16 -2.21 16 8 C -0.12 -2.39 5.92 -26.73 -0.16 -2.55 16 9 C -0.11 -2.57 4.98 -26.71 -0.13 -2.71 16 10 C 0.06 1.42 1.64 -91.75 -0.15 1.27 16 11 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 12 C -0.51 -13.87 7.77 -34.44 -0.27 -14.13 16 13 H 0.06 1.48 6.73 -52.49 -0.35 1.12 16 14 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -25.18 11.32 55.43 0.63 -24.55 16 16 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 21 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 22 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 1.32 6.47 -51.93 -0.34 0.99 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.94 7.82 -51.93 -0.41 0.53 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 260.24 15.07 3.92 3.92 Total: -1.00 -27.87 260.24 -6.42 -34.29 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.62 Total: -2.56 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 0.03 Total: -19.41 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.63 Total: -24.55 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.36 Total: -7.85 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.87 -6.42 -34.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261297206.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.234 kcal (2) G-P(sol) polarization free energy of solvation -27.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds