Wall clock time and date at job start Mon Mar 30 2020 02:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 113.99768 * 2 1 4 4 C 1.52997 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47497 * 304.99699 * 4 3 2 6 6 C 1.53002 * 109.47415 * 65.00051 * 4 3 2 7 7 C 1.53000 * 109.47233 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47060 * 299.99657 * 7 6 4 9 9 C 1.52999 * 109.47317 * 59.99960 * 8 7 6 10 10 C 1.52997 * 109.47232 * 184.99924 * 4 3 2 11 11 H 1.09002 * 109.47153 * 299.99992 * 10 4 3 12 12 C 1.50699 * 109.47078 * 59.99785 * 10 4 3 13 13 H 1.07999 * 120.00019 * 0.02562 * 12 10 4 14 14 C 1.37877 * 120.00129 * 179.97438 * 12 10 4 15 15 N 1.31516 * 120.00113 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00167 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47319 * 59.99928 * 16 14 12 18 18 H 1.48503 * 109.47266 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46734 * 299.99975 * 16 14 12 20 20 H 1.09003 * 109.47364 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47560 * 300.00019 * 1 2 3 22 22 H 1.08998 * 109.47296 * 59.99978 * 1 2 3 23 23 H 1.09002 * 109.47048 * 60.00255 * 3 2 1 24 24 H 1.09001 * 109.47280 * 299.99579 * 3 2 1 25 25 H 1.08992 * 109.47063 * 59.99950 * 6 4 3 26 26 H 1.09004 * 109.46733 * 299.99664 * 6 4 3 27 27 H 1.09002 * 109.47398 * 59.99826 * 7 6 4 28 28 H 1.09001 * 109.47194 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47853 * 180.02562 * 8 7 6 30 30 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 31 31 H 1.09000 * 109.47486 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.46716 * 60.00091 * 9 8 7 33 33 H 0.96999 * 120.00366 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 1 3.8514 0.5683 0.8409 6 6 3.9951 0.5370 -1.3083 7 6 5.5203 0.4157 -1.3086 8 6 6.1427 1.8076 -1.1827 9 6 5.6829 2.4555 0.1249 10 6 4.1572 2.5769 0.1251 11 1 3.8412 3.1934 -0.7165 12 6 3.7044 3.2150 1.4130 13 1 3.0398 2.6808 2.0758 14 6 4.1393 4.4804 1.7457 15 7 4.9489 5.1308 0.9389 16 14 3.5785 5.2710 3.3426 17 1 4.0089 4.4308 4.4888 18 1 4.1820 6.6223 3.4646 19 1 2.0981 5.3886 3.3434 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.6885 1.8464 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 3.6792 1.1534 -2.1498 26 1 3.5521 -0.4549 -1.3978 27 1 5.8360 -0.2010 -0.4671 28 1 5.8479 -0.0454 -2.2404 29 1 7.2292 1.7214 -1.1833 30 1 5.8270 2.4243 -2.0242 31 1 6.1259 3.4474 0.2145 32 1 5.9986 1.8388 0.9665 33 1 5.2546 6.0211 1.1727 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261297206.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:25 Heat of formation + Delta-G solvation = -95.292135 kcal Electronic energy + Delta-G solvation = -13330.779182 eV Core-core repulsion = 11161.578947 eV Total energy + Delta-G solvation = -2169.200235 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.88652 -38.03658 -34.82662 -32.68781 -31.15777 -28.01076 -26.72770 -25.64444 -22.79988 -21.81881 -20.37629 -18.41914 -17.17360 -16.68286 -16.46922 -16.05208 -15.18351 -14.83549 -14.61915 -14.22588 -13.97073 -13.38820 -12.90791 -12.82160 -12.54340 -12.50236 -12.19976 -12.04867 -11.78954 -11.63035 -11.57056 -11.17093 -10.68126 -10.50872 -10.41008 -10.22256 -8.04943 -6.18231 1.41318 1.42188 1.49515 2.44294 2.99088 3.22416 4.00864 4.18253 4.19227 4.41621 4.49581 4.56731 4.67060 4.75403 4.81424 4.83622 4.89819 4.99041 5.02602 5.09619 5.18966 5.31062 5.48643 5.49981 5.52565 5.64869 5.74102 6.05920 6.20648 6.36300 6.43898 6.92313 7.48887 8.98442 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.026305 B = 0.014010 C = 0.009594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.191698 B = 1998.061459 C = 2917.803450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.081 3.919 4 C -0.070 4.070 5 H 0.050 0.950 6 C -0.103 4.103 7 C -0.109 4.109 8 C -0.115 4.115 9 C -0.105 4.105 10 C 0.058 3.942 11 H -0.004 1.004 12 C -0.529 4.529 13 H 0.051 0.949 14 C 0.014 3.986 15 N -0.915 5.915 16 Si 0.946 3.054 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.272 1.272 20 H 0.104 0.896 21 H 0.039 0.961 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.039 0.961 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.025 0.975 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.797 -7.775 -3.184 9.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C 0.004 3.996 4 C -0.089 4.089 5 H 0.069 0.931 6 C -0.140 4.140 7 C -0.146 4.146 8 C -0.152 4.152 9 C -0.143 4.143 10 C 0.039 3.961 11 H 0.014 0.986 12 C -0.568 4.568 13 H 0.069 0.931 14 C -0.184 4.184 15 N -0.555 5.555 16 Si 0.772 3.228 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.197 1.197 20 H 0.122 0.878 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.599 -7.768 -3.200 9.139 hybrid contribution -0.418 1.136 0.960 1.545 sum -4.017 -6.631 -2.240 8.070 Atomic orbital electron populations 1.22899 0.80237 1.03681 1.00299 1.87792 1.20968 1.28879 1.95498 1.22473 0.94325 0.83289 0.99473 1.21098 0.92340 0.97832 0.97601 0.93134 1.21480 0.96037 1.00117 0.96391 1.21484 0.94982 0.96435 1.01710 1.21557 0.99343 0.96510 0.97805 1.21448 0.98170 0.99784 0.94934 1.18551 0.92495 0.90290 0.94726 0.98581 1.21553 1.28302 1.00665 1.06232 0.93073 1.25680 0.95257 0.97859 0.99610 1.70009 1.34398 1.13029 1.38062 0.85793 0.78656 0.77570 0.80731 1.19886 1.21042 1.19743 0.87780 0.94257 0.93581 0.93990 0.94241 0.93074 0.91445 0.92455 0.90533 0.92260 0.93548 0.92265 0.95630 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 11.01 113.37 1.25 1.91 16 2 O -0.41 -14.75 10.24 -148.98 -1.53 -16.27 16 3 C 0.08 3.23 5.15 71.98 0.37 3.61 16 4 C -0.07 -2.99 1.91 -10.79 -0.02 -3.01 16 5 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 6 C -0.10 -3.70 5.10 30.60 0.16 -3.54 16 7 C -0.11 -3.62 5.92 30.59 0.18 -3.44 16 8 C -0.11 -4.41 5.92 30.59 0.18 -4.23 16 9 C -0.11 -5.06 4.98 30.61 0.15 -4.91 16 10 C 0.06 2.91 1.64 -11.52 -0.02 2.89 16 11 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 12 C -0.53 -29.10 7.77 25.60 0.20 -28.90 16 13 H 0.05 2.78 6.73 -2.91 -0.02 2.76 16 14 C 0.01 0.80 5.30 84.65 0.45 1.25 16 15 N -0.92 -52.97 11.32 21.45 0.24 -52.73 16 16 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 21 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 22 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.04 1.82 6.47 -2.39 -0.02 1.81 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.07 2.24 7.82 -2.39 -0.02 2.22 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 32 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.26 14.37 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -59.60 260.24 4.69 -54.91 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 1.05 Total: 6.65 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 2.90 Total: -38.38 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.24 Total: -52.73 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -1.53 Total: -16.27 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -59.60 4.69 -54.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261297206.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.387 kcal (2) G-P(sol) polarization free energy of solvation -59.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds