Wall clock time and date at job start Mon Mar 30 2020 02:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00516 * 2 1 4 4 C 1.53002 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47067 * 55.00089 * 4 3 2 6 6 C 1.52997 * 109.47143 * 295.00072 * 4 3 2 7 7 C 1.53002 * 109.46817 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47233 * 60.00194 * 7 6 4 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 6 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 11 11 H 1.09000 * 109.47486 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46953 * 60.00071 * 10 9 8 13 13 H 1.07998 * 119.99823 * 240.00260 * 12 10 9 14 14 C 1.37879 * 119.99661 * 60.00040 * 12 10 9 15 15 N 1.31510 * 120.00409 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99651 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47086 * 60.00185 * 16 14 12 18 18 H 1.48503 * 109.47243 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47155 * 300.00238 * 16 14 12 20 20 H 1.09005 * 109.46510 * 300.00100 * 1 2 3 21 21 H 1.08996 * 109.47008 * 60.00041 * 1 2 3 22 22 H 1.08995 * 109.47237 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47154 * 60.00089 * 3 2 1 24 24 H 1.08999 * 109.46794 * 300.00246 * 3 2 1 25 25 H 1.08993 * 109.47194 * 59.99677 * 6 4 3 26 26 H 1.09002 * 109.46695 * 299.99691 * 6 4 3 27 27 H 1.08992 * 109.47063 * 299.99823 * 7 6 4 28 28 H 1.09004 * 109.46733 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47398 * 59.99826 * 8 7 6 30 30 H 1.09001 * 109.47194 * 180.02562 * 8 7 6 31 31 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 33 33 H 0.96998 * 120.00365 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8508 0.5683 -0.8427 6 6 3.9963 0.5362 1.3064 7 6 5.5216 0.4159 1.3059 8 6 6.1430 1.8084 1.1805 9 6 5.6822 2.4567 -0.1265 10 6 4.1570 2.5770 -0.1262 11 1 3.8286 3.0384 -1.0575 12 6 3.7205 3.4286 1.0381 13 1 3.0655 3.0177 1.7921 14 6 4.1576 4.7323 1.1407 15 7 4.9548 5.2328 0.2223 16 14 3.6171 5.7876 2.5842 17 1 4.0649 5.1582 3.8525 18 1 4.2197 7.1394 2.4621 19 1 2.1367 5.9043 2.5852 20 1 -0.3632 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.6887 1.8463 0.8900 24 1 1.6887 1.8463 -0.8900 25 1 3.5532 -0.4556 1.3960 26 1 3.6810 1.1525 2.1484 27 1 5.8372 -0.2000 0.4639 28 1 5.8499 -0.0455 2.2373 29 1 5.8273 2.4244 2.0226 30 1 7.2296 1.7227 1.1798 31 1 6.1252 3.4485 -0.2161 32 1 5.9979 1.8408 -0.9686 33 1 5.2626 6.1498 0.2947 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261297209.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:30 Heat of formation + Delta-G solvation = -91.483784 kcal Electronic energy + Delta-G solvation = -13499.620456 eV Core-core repulsion = 11330.585364 eV Total energy + Delta-G solvation = -2169.035092 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.97877 -38.08249 -34.49909 -32.62708 -31.01524 -28.02961 -26.80615 -25.61666 -22.90905 -21.86368 -20.48661 -17.66120 -17.18088 -16.61800 -16.51164 -16.18304 -15.33112 -14.76984 -14.72609 -14.24249 -13.55714 -13.31999 -12.83794 -12.74048 -12.60768 -12.48322 -12.38496 -12.03216 -11.85814 -11.66445 -11.35086 -10.84677 -10.63097 -10.56949 -10.35015 -10.16482 -8.00430 -6.09942 1.43061 1.44131 1.50391 2.47329 2.99689 3.29235 4.06249 4.20614 4.27065 4.48661 4.51698 4.59021 4.67677 4.81772 4.83662 4.90036 4.98373 5.03894 5.09295 5.12694 5.19983 5.28659 5.50732 5.59426 5.68706 5.79711 5.80845 6.00421 6.22647 6.36204 6.48627 6.97944 7.55302 9.04324 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.028920 B = 0.013901 C = 0.010960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.945335 B = 2013.806185 C = 2554.096597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.083 3.917 4 C -0.070 4.070 5 H 0.052 0.948 6 C -0.092 4.092 7 C -0.106 4.106 8 C -0.099 4.099 9 C -0.106 4.106 10 C 0.051 3.949 11 H -0.010 1.010 12 C -0.502 4.502 13 H 0.056 0.944 14 C 0.015 3.985 15 N -0.919 5.919 16 Si 0.939 3.061 17 H -0.272 1.272 18 H -0.290 1.290 19 H -0.274 1.274 20 H 0.041 0.959 21 H 0.043 0.957 22 H 0.104 0.896 23 H 0.045 0.955 24 H 0.034 0.966 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.024 0.976 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 -8.067 1.537 9.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.007 3.993 4 C -0.088 4.088 5 H 0.070 0.930 6 C -0.130 4.130 7 C -0.144 4.144 8 C -0.136 4.136 9 C -0.144 4.144 10 C 0.032 3.968 11 H 0.008 0.992 12 C -0.540 4.540 13 H 0.074 0.926 14 C -0.183 4.183 15 N -0.559 5.559 16 Si 0.766 3.234 17 H -0.198 1.198 18 H -0.216 1.216 19 H -0.199 1.199 20 H 0.060 0.940 21 H 0.061 0.939 22 H 0.122 0.878 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.743 -8.066 1.496 9.017 hybrid contribution -0.398 1.344 0.461 1.475 sum -4.141 -6.722 1.957 8.134 Atomic orbital electron populations 1.22894 0.80243 1.03664 1.00295 1.87793 1.20952 1.28926 1.95493 1.22436 0.94320 0.83155 0.99405 1.21073 0.92292 0.97581 0.97870 0.93004 1.21324 0.95704 0.99064 0.96899 1.21449 0.95329 0.96394 1.01200 1.21298 0.97792 0.96176 0.98373 1.21397 0.98222 0.99565 0.95204 1.18611 0.92610 0.90512 0.95019 0.99233 1.21332 1.28028 0.96260 1.08363 0.92611 1.25599 0.95505 0.99153 0.98058 1.70004 1.35210 1.15102 1.35586 0.85903 0.78548 0.78109 0.80853 1.19777 1.21569 1.19919 0.93991 0.93865 0.87803 0.93657 0.94791 0.92219 0.93174 0.92289 0.91464 0.93669 0.93429 0.92293 0.95694 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.41 -14.53 10.24 -148.98 -1.53 -16.06 16 3 C 0.08 3.28 4.97 71.98 0.36 3.64 16 4 C -0.07 -2.92 2.19 -10.79 -0.02 -2.94 16 5 H 0.05 2.12 8.14 -2.39 -0.02 2.11 16 6 C -0.09 -3.55 4.87 30.59 0.15 -3.40 16 7 C -0.11 -3.80 5.92 30.60 0.18 -3.61 16 8 C -0.10 -4.13 5.70 30.59 0.17 -3.95 16 9 C -0.11 -5.03 5.23 30.59 0.16 -4.87 16 10 C 0.05 2.52 2.12 -11.54 -0.02 2.50 16 11 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 12 C -0.50 -26.34 5.94 25.60 0.15 -26.19 16 13 H 0.06 2.89 5.68 -2.91 -0.02 2.87 16 14 C 0.01 0.80 5.30 84.66 0.45 1.25 16 15 N -0.92 -52.59 11.32 21.45 0.24 -52.34 16 16 Si 0.94 43.12 29.54 68.60 2.03 45.15 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 21 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 23 H 0.05 1.88 6.79 -2.39 -0.02 1.86 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 2.10 7.82 -2.39 -0.02 2.09 16 26 H 0.05 2.07 6.62 -2.39 -0.02 2.06 16 27 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.04 2.09 7.22 -2.39 -0.02 2.07 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 32 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -57.80 255.61 4.62 -53.18 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.06 Total: 5.76 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 2.82 Total: -35.68 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.24 Total: -52.34 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -1.53 Total: -16.06 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -57.80 4.62 -53.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261297209.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.305 kcal (2) G-P(sol) polarization free energy of solvation -57.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds