Wall clock time and date at job start Mon Mar 30 2020 01:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00148 * 2 1 4 4 C 1.52994 * 109.47364 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.46735 * 300.00330 * 3 2 1 6 6 H 1.07997 * 119.99398 * 144.70783 * 5 3 2 7 7 C 1.37875 * 120.00363 * 324.70465 * 5 3 2 8 8 N 1.31509 * 120.00295 * 175.53139 * 7 5 3 9 9 Si 1.86799 * 119.99792 * 355.52702 * 7 5 3 10 10 H 1.48499 * 109.47106 * 89.48625 * 9 7 5 11 11 H 1.48503 * 109.47124 * 209.48635 * 9 7 5 12 12 H 1.48501 * 109.47234 * 329.48539 * 9 7 5 13 13 C 1.52995 * 109.46677 * 59.99859 * 3 2 1 14 14 C 1.53000 * 109.47029 * 65.00674 * 13 3 2 15 15 C 1.53787 * 113.61509 * 184.99602 * 14 13 3 16 16 C 1.53774 * 87.17418 * 220.05696 * 15 14 13 17 17 C 1.53784 * 87.07986 * 25.39045 * 16 15 14 18 18 H 1.08998 * 109.46788 * 299.99300 * 1 2 3 19 19 H 1.08997 * 109.47301 * 59.99929 * 1 2 3 20 20 H 1.09007 * 109.46770 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47531 * 306.80649 * 4 3 2 22 22 H 1.09001 * 109.46880 * 66.80119 * 4 3 2 23 23 H 1.08992 * 109.47221 * 186.79565 * 4 3 2 24 24 H 0.97003 * 120.00377 * 180.02562 * 8 7 5 25 25 H 1.08992 * 109.47980 * 305.00188 * 13 3 2 26 26 H 1.09011 * 109.47132 * 184.99986 * 13 3 2 27 27 H 1.08994 * 112.90727 * 316.24097 * 14 13 3 28 28 H 1.09000 * 113.61470 * 105.46561 * 15 14 13 29 29 H 1.09000 * 113.61294 * 334.65171 * 15 14 13 30 30 H 1.09000 * 113.61467 * 139.93652 * 16 15 14 31 31 H 1.09000 * 113.61940 * 270.84247 * 16 15 14 32 32 H 1.08997 * 113.61302 * 89.12053 * 17 16 15 33 33 H 1.09003 * 113.61210 * 219.93347 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 1.5655 2.0533 -1.2305 6 1 1.3877 3.1174 -1.1807 7 6 1.3857 1.3791 -2.4196 8 7 0.9137 2.0136 -3.4704 9 14 1.8126 -0.4356 -2.5382 10 1 0.6250 -1.2484 -2.1721 11 1 2.2235 -0.7576 -3.9284 12 1 2.9289 -0.7433 -1.6083 13 6 1.5588 2.0646 1.2492 14 6 2.1161 1.3735 2.4953 15 6 1.6197 1.9882 3.8147 16 6 3.0467 1.7936 4.3538 17 6 3.5228 1.8564 2.8928 18 1 -0.3633 0.5137 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0278 -0.0005 21 1 3.8488 0.5424 0.8237 22 1 3.8660 0.7523 -0.9437 23 1 3.9781 2.1732 0.1222 24 1 0.7869 1.5392 -4.3070 25 1 0.4699 2.0738 1.2952 26 1 1.9292 3.0890 1.2056 27 1 2.0217 0.2884 2.4565 28 1 0.8732 1.3804 4.3259 29 1 1.3254 3.0339 3.7256 30 1 3.3999 2.6246 4.9642 31 1 3.2073 0.8234 4.8240 32 1 3.7493 2.8662 2.5505 33 1 4.3136 1.1433 2.6603 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261302161.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:13 Heat of formation + Delta-G solvation = -51.415322 kcal Electronic energy + Delta-G solvation = -13722.412927 eV Core-core repulsion = 11555.115334 eV Total energy + Delta-G solvation = -2167.297593 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.53565 -38.63455 -34.60410 -33.28092 -29.43267 -27.71747 -26.97415 -26.03339 -24.27478 -20.80514 -20.24489 -18.99601 -17.44032 -16.50038 -16.37840 -15.88466 -15.33466 -15.27632 -14.61331 -14.13513 -13.56211 -13.41160 -13.10083 -12.87251 -12.54120 -12.44139 -12.25056 -12.11414 -12.03972 -11.71603 -11.33510 -11.11514 -10.94961 -10.76783 -10.53761 -9.79395 -8.32178 -6.41443 1.43653 1.47265 1.69029 2.44448 3.00430 3.30363 3.84771 3.91570 3.99527 4.10689 4.46182 4.63206 4.64527 4.73391 4.80155 4.85890 4.93638 4.98379 5.00171 5.00599 5.10610 5.12790 5.18238 5.31098 5.38806 5.52390 5.64985 5.75244 5.81075 5.98252 6.63372 6.74134 7.34284 8.81640 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053818 B = 0.011981 C = 0.011837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.147624 B = 2336.516222 C = 2364.856200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.395 6.395 3 C 0.199 3.801 4 C -0.122 4.122 5 C -0.543 4.543 6 H 0.037 0.963 7 C 0.026 3.974 8 N -0.944 5.944 9 Si 0.976 3.024 10 H -0.277 1.277 11 H -0.337 1.337 12 H -0.247 1.247 13 C -0.110 4.110 14 C -0.109 4.109 15 C -0.136 4.136 16 C -0.131 4.131 17 C -0.136 4.136 18 H 0.054 0.946 19 H 0.025 0.975 20 H 0.084 0.916 21 H 0.062 0.938 22 H 0.032 0.968 23 H 0.064 0.936 24 H 0.263 0.737 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.849 -3.293 14.038 14.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.316 6.316 3 C 0.161 3.839 4 C -0.179 4.179 5 C -0.580 4.580 6 H 0.055 0.945 7 C -0.172 4.172 8 N -0.583 5.583 9 Si 0.809 3.191 10 H -0.203 1.203 11 H -0.269 1.269 12 H -0.172 1.172 13 C -0.147 4.147 14 C -0.127 4.127 15 C -0.174 4.174 16 C -0.169 4.169 17 C -0.174 4.174 18 H 0.073 0.927 19 H 0.043 0.957 20 H 0.103 0.897 21 H 0.081 0.919 22 H 0.051 0.949 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.907 -3.439 13.903 14.614 hybrid contribution -0.367 -0.144 -0.988 1.063 sum 2.540 -3.583 12.915 13.642 Atomic orbital electron populations 1.22648 0.82089 1.01406 1.00480 1.87520 1.19924 1.31345 1.92775 1.19575 0.91655 0.80143 0.92544 1.21937 0.94503 1.01160 1.00320 1.21643 1.46182 0.95365 0.94845 0.94496 1.25761 0.93311 1.03206 0.94928 1.70094 1.46445 1.39061 1.02715 0.85362 0.80581 0.80161 0.73017 1.20349 1.26924 1.17152 1.21896 0.99848 0.98701 0.94298 1.22530 0.97122 0.99699 0.93333 1.22939 0.97425 1.00939 0.96078 1.22774 0.95792 1.02452 0.95849 1.23079 0.96339 1.01251 0.96688 0.92745 0.95674 0.89740 0.91871 0.94935 0.91706 0.92814 0.93130 0.92693 0.89901 0.91261 0.90527 0.90622 0.89550 0.90678 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.23 8.57 113.37 0.97 2.20 16 2 O -0.39 -17.75 6.16 -148.98 -0.92 -18.67 16 3 C 0.20 9.02 0.38 -11.54 0.00 9.02 16 4 C -0.12 -5.05 7.10 71.98 0.51 -4.54 16 5 C -0.54 -30.54 7.80 25.60 0.20 -30.34 16 6 H 0.04 2.30 8.05 -2.91 -0.02 2.28 16 7 C 0.03 1.55 4.62 84.66 0.39 1.94 16 8 N -0.94 -59.67 13.96 21.45 0.30 -59.37 16 9 Si 0.98 49.58 23.11 68.60 1.59 51.16 16 10 H -0.28 -13.41 6.53 99.48 0.65 -12.76 16 11 H -0.34 -17.55 7.11 99.48 0.71 -16.84 16 12 H -0.25 -11.92 5.26 99.48 0.52 -11.39 16 13 C -0.11 -4.20 3.94 30.59 0.12 -4.08 16 14 C -0.11 -3.29 2.94 -10.21 -0.03 -3.32 16 15 C -0.14 -3.35 7.64 31.12 0.24 -3.11 16 16 C -0.13 -2.81 8.08 31.12 0.25 -2.56 16 17 C -0.14 -3.58 6.02 31.18 0.19 -3.39 16 18 H 0.05 1.99 6.31 -2.39 -0.02 1.98 16 19 H 0.02 1.19 5.92 -2.39 -0.01 1.18 16 20 H 0.08 3.02 8.14 -2.38 -0.02 3.00 16 21 H 0.06 2.27 5.95 -2.39 -0.01 2.26 16 22 H 0.03 1.44 5.83 -2.39 -0.01 1.43 16 23 H 0.06 2.51 8.09 -2.39 -0.02 2.49 16 24 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 25 H 0.05 1.98 6.29 -2.39 -0.02 1.97 16 26 H 0.05 2.14 7.85 -2.38 -0.02 2.12 16 27 H 0.08 2.65 7.69 -2.39 -0.02 2.64 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.88 8.10 -2.39 -0.02 1.86 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 2.02 7.90 -2.39 -0.02 2.00 16 33 H 0.07 1.71 7.17 -2.39 -0.02 1.70 16 Total: -1.00 -64.21 245.25 4.63 -59.58 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 0.82 Total: 5.48 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 2.84 Total: -38.19 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.30 Total: -59.37 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.92 Total: -18.67 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 1.59 Total: 51.16 kcal Total: -64.21 4.63 -59.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261302161.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.167 kcal (2) G-P(sol) polarization free energy of solvation -64.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds