Wall clock time and date at job start Mon Mar 30 2020 02:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00286 * 2 1 4 4 C 1.52995 * 109.47289 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.46867 * 300.00444 * 3 2 1 6 6 H 1.07996 * 119.99861 * 125.33153 * 5 3 2 7 7 C 1.37878 * 119.99789 * 305.32741 * 5 3 2 8 8 N 1.31514 * 120.00090 * 196.05275 * 7 5 3 9 9 Si 1.86806 * 120.00193 * 16.05084 * 7 5 3 10 10 H 1.48493 * 109.47071 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47114 * 59.99733 * 9 7 5 12 12 H 1.48498 * 109.46793 * 300.00236 * 9 7 5 13 13 C 1.53001 * 109.46877 * 59.99686 * 3 2 1 14 14 C 1.54891 * 110.75592 * 177.85287 * 13 3 2 15 15 C 1.54463 * 104.10094 * 203.89827 * 14 13 3 16 16 C 1.53882 * 106.68665 * 23.34073 * 15 14 13 17 17 C 1.54263 * 106.59455 * 0.15905 * 16 15 14 18 18 H 1.08997 * 109.47427 * 299.99797 * 1 2 3 19 19 H 1.09004 * 109.47389 * 60.00351 * 1 2 3 20 20 H 1.09002 * 109.47165 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46891 * 186.42743 * 4 3 2 22 22 H 1.08998 * 109.46785 * 306.41969 * 4 3 2 23 23 H 1.08993 * 109.47167 * 66.42182 * 4 3 2 24 24 H 0.97003 * 119.99842 * 354.88674 * 8 7 5 25 25 H 1.08998 * 110.67384 * 301.08817 * 13 3 2 26 26 H 1.09000 * 110.48366 * 322.42660 * 14 13 3 27 27 H 1.08999 * 110.48538 * 85.06217 * 14 13 3 28 28 H 1.09007 * 109.85730 * 264.10316 * 15 14 13 29 29 H 1.08997 * 110.16452 * 142.75048 * 15 14 13 30 30 H 1.08996 * 110.02967 * 240.87687 * 16 15 14 31 31 H 1.08996 * 110.07152 * 119.46640 * 16 15 14 32 32 H 1.08998 * 110.48737 * 217.70995 * 17 16 15 33 33 H 1.08997 * 110.48632 * 95.07090 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 1.5655 2.0533 -1.2305 6 1 1.0923 3.0192 -1.1336 7 6 1.7628 1.5043 -2.4797 8 7 1.6752 2.2610 -3.5518 9 14 2.1546 -0.3143 -2.6496 10 1 2.3208 -0.6527 -4.0859 11 1 1.0432 -1.1156 -2.0770 12 1 3.4118 -0.6199 -1.9208 13 6 1.5587 2.0647 1.2492 14 6 2.2151 3.4664 1.3068 15 6 2.1900 3.8324 2.8072 16 6 2.1099 2.5066 3.5842 17 6 2.0932 1.3793 2.5313 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 3.9783 2.1739 0.1144 22 1 3.8497 0.5475 0.8261 23 1 3.8648 0.7463 -0.9427 24 1 1.3994 3.1874 -3.4704 25 1 0.4721 2.1455 1.2787 26 1 3.2419 3.4220 0.9436 27 1 1.6348 4.1835 0.7261 28 1 1.3153 4.4457 3.0242 29 1 3.0988 4.3697 3.0782 30 1 1.1965 2.4764 4.1780 31 1 2.9799 2.3995 4.2320 32 1 1.4241 0.5769 2.8420 33 1 3.1001 0.9955 2.3672 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261303514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:28 Heat of formation + Delta-G solvation = -59.161061 kcal Electronic energy + Delta-G solvation = -13892.036476 eV Core-core repulsion = 11724.403002 eV Total energy + Delta-G solvation = -2167.633474 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.76744 -36.00264 -32.64552 -30.83518 -28.16160 -27.17271 -25.26895 -24.72005 -21.33474 -19.82834 -18.20051 -17.23329 -15.80309 -15.08540 -14.49325 -14.08121 -13.62835 -13.21137 -12.93100 -12.79858 -12.24688 -11.52623 -11.39106 -10.90680 -10.73528 -10.65068 -10.48388 -10.09552 -10.02665 -9.94730 -9.79892 -9.72356 -9.48023 -8.61635 -8.34707 -8.00126 -6.40235 -4.15248 3.59947 3.66945 3.92279 4.62638 4.95276 5.19742 5.22194 5.28461 5.45064 5.92217 5.94975 6.07230 6.11405 6.15460 6.32124 6.36967 6.37116 6.43707 6.44054 6.54535 6.59949 6.80741 6.81591 6.87712 6.95920 6.99563 7.10615 7.55969 7.94249 8.32901 8.56387 8.95754 9.61950 10.94345 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045459 B = 0.014330 C = 0.012884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.791376 B = 1953.465667 C = 2172.663931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.400 6.400 3 C 0.210 3.790 4 C -0.137 4.137 5 C -0.620 4.620 6 H 0.058 0.942 7 C 0.039 3.961 8 N -0.901 5.901 9 Si 1.079 2.921 10 H -0.315 1.315 11 H -0.283 1.283 12 H -0.280 1.280 13 C -0.096 4.096 14 C -0.107 4.107 15 C -0.127 4.127 16 C -0.123 4.123 17 C -0.122 4.122 18 H 0.025 0.975 19 H 0.049 0.951 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.034 0.966 23 H 0.058 0.942 24 H 0.265 0.735 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.436 -1.059 10.582 10.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.321 6.321 3 C 0.172 3.828 4 C -0.194 4.194 5 C -0.657 4.657 6 H 0.076 0.924 7 C -0.167 4.167 8 N -0.534 5.534 9 Si 0.912 3.088 10 H -0.245 1.245 11 H -0.209 1.209 12 H -0.207 1.207 13 C -0.115 4.115 14 C -0.144 4.144 15 C -0.164 4.164 16 C -0.161 4.161 17 C -0.159 4.159 18 H 0.043 0.957 19 H 0.068 0.932 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.053 0.947 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.933 -2.359 9.505 9.837 hybrid contribution -0.727 1.600 1.170 2.111 sum 0.206 -0.759 10.675 10.704 Atomic orbital electron populations 1.22294 0.83233 0.99451 1.00021 1.87617 1.18680 1.32037 1.93780 1.19482 0.90374 0.80269 0.92628 1.22111 0.96152 1.00407 1.00687 1.22294 1.45627 1.06115 0.91680 0.92411 1.25930 0.92904 1.05888 0.92017 1.70921 1.41997 1.08824 1.31671 0.83566 0.77785 0.74821 0.72639 1.24478 1.20941 1.20702 1.22493 0.99175 0.94910 0.94949 1.22364 1.01430 0.96879 0.93739 1.22224 1.00494 0.96927 0.96782 1.22135 1.00434 0.95598 0.97910 1.22480 1.01525 0.96828 0.95091 0.95655 0.93194 0.92500 0.92137 0.94740 0.92286 0.92464 0.91795 0.91185 0.92210 0.92831 0.92717 0.92825 0.92768 0.92596 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.98 8.98 101.05 0.91 1.89 16 2 O -0.40 -9.40 6.94 -35.23 -0.24 -9.64 16 3 C 0.21 4.91 0.19 -91.77 -0.02 4.89 16 4 C -0.14 -3.04 7.84 37.16 0.29 -2.75 16 5 C -0.62 -16.86 6.75 -34.44 -0.23 -17.09 16 6 H 0.06 1.69 7.41 -52.49 -0.39 1.30 16 7 C 0.04 1.11 5.24 -17.82 -0.09 1.02 16 8 N -0.90 -27.60 13.70 55.43 0.76 -26.84 16 9 Si 1.08 27.53 24.20 -169.99 -4.11 23.42 16 10 H -0.32 -8.22 7.11 56.52 0.40 -7.82 16 11 H -0.28 -6.89 6.06 56.52 0.34 -6.54 16 12 H -0.28 -6.82 5.65 56.52 0.32 -6.50 16 13 C -0.10 -1.95 1.84 -88.63 -0.16 -2.11 16 14 C -0.11 -2.00 5.52 -24.97 -0.14 -2.14 16 15 C -0.13 -1.94 6.81 -25.50 -0.17 -2.11 16 16 C -0.12 -1.82 6.80 -25.61 -0.17 -1.99 16 17 C -0.12 -2.11 5.98 -25.07 -0.15 -2.26 16 18 H 0.02 0.48 6.41 -51.93 -0.33 0.15 16 19 H 0.05 1.15 6.85 -51.93 -0.36 0.80 16 20 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 21 H 0.06 1.28 5.82 -51.93 -0.30 0.97 16 22 H 0.03 0.69 6.39 -51.93 -0.33 0.35 16 23 H 0.06 1.41 4.69 -51.93 -0.24 1.16 16 24 H 0.27 8.06 8.73 -40.82 -0.36 7.71 16 25 H 0.06 1.34 6.57 -51.93 -0.34 1.00 16 26 H 0.07 1.35 5.68 -51.93 -0.29 1.06 16 27 H 0.06 1.19 7.76 -51.93 -0.40 0.78 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.21 5.81 -51.93 -0.30 0.91 16 LS Contribution 240.57 15.07 3.63 3.63 Total: -1.00 -29.28 240.57 -5.04 -34.32 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -5.12 Total: -2.23 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 0.06 Total: -22.66 kcal Atomic # 7 Polarization: -27.60 SS G_CDS: 0.76 Total: -26.84 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.24 Total: -9.64 kcal Atomic # 14 Polarization: 27.53 SS G_CDS: -4.11 Total: 23.42 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -29.28 -5.04 -34.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261303514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.837 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds