Wall clock time and date at job start Mon Mar 30 2020 02:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00286 * 2 1 4 4 C 1.52995 * 109.47289 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.46867 * 300.00444 * 3 2 1 6 6 H 1.07996 * 119.99861 * 125.33153 * 5 3 2 7 7 C 1.37878 * 119.99789 * 305.32741 * 5 3 2 8 8 N 1.31514 * 120.00090 * 196.05275 * 7 5 3 9 9 Si 1.86806 * 120.00193 * 16.05084 * 7 5 3 10 10 H 1.48493 * 109.47071 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47114 * 59.99733 * 9 7 5 12 12 H 1.48498 * 109.46793 * 300.00236 * 9 7 5 13 13 C 1.53001 * 109.46877 * 59.99686 * 3 2 1 14 14 C 1.54891 * 110.75592 * 177.85287 * 13 3 2 15 15 C 1.54463 * 104.10094 * 203.89827 * 14 13 3 16 16 C 1.53882 * 106.68665 * 23.34073 * 15 14 13 17 17 C 1.54263 * 106.59455 * 0.15905 * 16 15 14 18 18 H 1.08997 * 109.47427 * 299.99797 * 1 2 3 19 19 H 1.09004 * 109.47389 * 60.00351 * 1 2 3 20 20 H 1.09002 * 109.47165 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46891 * 186.42743 * 4 3 2 22 22 H 1.08998 * 109.46785 * 306.41969 * 4 3 2 23 23 H 1.08993 * 109.47167 * 66.42182 * 4 3 2 24 24 H 0.97003 * 119.99842 * 354.88674 * 8 7 5 25 25 H 1.08998 * 110.67384 * 301.08817 * 13 3 2 26 26 H 1.09000 * 110.48366 * 322.42660 * 14 13 3 27 27 H 1.08999 * 110.48538 * 85.06217 * 14 13 3 28 28 H 1.09007 * 109.85730 * 264.10316 * 15 14 13 29 29 H 1.08997 * 110.16452 * 142.75048 * 15 14 13 30 30 H 1.08996 * 110.02967 * 240.87687 * 16 15 14 31 31 H 1.08996 * 110.07152 * 119.46640 * 16 15 14 32 32 H 1.08998 * 110.48737 * 217.70995 * 17 16 15 33 33 H 1.08997 * 110.48632 * 95.07090 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 1.5655 2.0533 -1.2305 6 1 1.0923 3.0192 -1.1336 7 6 1.7628 1.5043 -2.4797 8 7 1.6752 2.2610 -3.5518 9 14 2.1546 -0.3143 -2.6496 10 1 2.3208 -0.6527 -4.0859 11 1 1.0432 -1.1156 -2.0770 12 1 3.4118 -0.6199 -1.9208 13 6 1.5587 2.0647 1.2492 14 6 2.2151 3.4664 1.3068 15 6 2.1900 3.8324 2.8072 16 6 2.1099 2.5066 3.5842 17 6 2.0932 1.3793 2.5313 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 3.9783 2.1739 0.1144 22 1 3.8497 0.5475 0.8261 23 1 3.8648 0.7463 -0.9427 24 1 1.3994 3.1874 -3.4704 25 1 0.4721 2.1455 1.2787 26 1 3.2419 3.4220 0.9436 27 1 1.6348 4.1835 0.7261 28 1 1.3153 4.4457 3.0242 29 1 3.0988 4.3697 3.0782 30 1 1.1965 2.4764 4.1780 31 1 2.9799 2.3995 4.2320 32 1 1.4241 0.5769 2.8420 33 1 3.1001 0.9955 2.3672 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261303514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:28 Heat of formation + Delta-G solvation = -77.845387 kcal Electronic energy + Delta-G solvation = -13892.846689 eV Core-core repulsion = 11724.403002 eV Total energy + Delta-G solvation = -2168.443687 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.42770 -37.58656 -34.76850 -32.62483 -29.53301 -28.71757 -27.12464 -26.64524 -23.06640 -21.15177 -20.01467 -19.19897 -17.43044 -16.71296 -16.29686 -15.72424 -15.31649 -14.91565 -14.54301 -14.50931 -14.22644 -13.18754 -13.08437 -12.58537 -12.30343 -12.05326 -11.93051 -11.82710 -11.79283 -11.68778 -11.60685 -11.19535 -11.09094 -10.64874 -10.43262 -9.95043 -8.65684 -6.42061 1.55101 1.60646 1.89082 2.52435 3.01841 3.41463 3.85332 3.91549 3.93981 4.46974 4.54462 4.57317 4.71520 4.78823 4.79844 4.85909 4.87862 4.93610 4.97549 5.05537 5.11786 5.17496 5.23950 5.26537 5.46866 5.48537 5.56759 5.79733 5.91905 6.04965 6.50241 6.84553 7.42558 8.65514 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045459 B = 0.014330 C = 0.012884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.791376 B = 1953.465667 C = 2172.663931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.406 6.406 3 C 0.206 3.794 4 C -0.136 4.136 5 C -0.607 4.607 6 H 0.023 0.977 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 1.107 2.893 10 H -0.327 1.327 11 H -0.264 1.264 12 H -0.259 1.259 13 C -0.099 4.099 14 C -0.109 4.109 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.116 4.116 18 H 0.043 0.957 19 H 0.020 0.980 20 H 0.087 0.913 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.040 0.960 24 H 0.252 0.748 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.950 -2.219 13.272 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.327 6.327 3 C 0.168 3.832 4 C -0.193 4.193 5 C -0.644 4.644 6 H 0.042 0.958 7 C -0.205 4.205 8 N -0.574 5.574 9 Si 0.935 3.065 10 H -0.258 1.258 11 H -0.190 1.190 12 H -0.184 1.184 13 C -0.118 4.118 14 C -0.147 4.147 15 C -0.157 4.157 16 C -0.154 4.154 17 C -0.154 4.154 18 H 0.061 0.939 19 H 0.039 0.961 20 H 0.105 0.895 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.442 -3.516 12.228 12.804 hybrid contribution -0.952 2.022 0.350 2.262 sum 0.490 -1.494 12.577 12.675 Atomic orbital electron populations 1.22441 0.82078 1.01277 0.99511 1.87569 1.19895 1.31494 1.93745 1.19479 0.91168 0.80300 0.92265 1.22077 0.95127 1.01314 1.00795 1.22475 1.43647 1.04782 0.93503 0.95822 1.26975 0.92919 1.08473 0.92160 1.71019 1.45185 1.08440 1.32798 0.83230 0.79253 0.71732 0.72287 1.25758 1.18979 1.18440 1.22413 0.98588 0.95650 0.95151 1.22339 1.00214 0.95747 0.96403 1.22182 1.01924 0.97873 0.93753 1.22111 1.02329 0.93619 0.97334 1.22428 1.01322 0.97660 0.93944 0.93853 0.96095 0.89499 0.91590 0.91934 0.94142 0.93863 0.93025 0.91960 0.94709 0.92012 0.90854 0.91384 0.90468 0.91968 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.73 8.98 113.37 1.02 2.75 16 2 O -0.41 -18.14 6.94 -148.98 -1.03 -19.17 16 3 C 0.21 9.37 0.19 -11.54 0.00 9.37 16 4 C -0.14 -5.81 7.84 71.98 0.56 -5.24 16 5 C -0.61 -33.60 6.75 25.60 0.17 -33.43 16 6 H 0.02 1.44 7.41 -2.91 -0.02 1.42 16 7 C -0.01 -0.35 5.24 84.65 0.44 0.09 16 8 N -0.94 -59.49 13.70 21.45 0.29 -59.20 16 9 Si 1.11 55.22 24.20 68.60 1.66 56.88 16 10 H -0.33 -16.88 7.11 99.48 0.71 -16.17 16 11 H -0.26 -12.24 6.06 99.48 0.60 -11.64 16 12 H -0.26 -11.97 5.65 99.48 0.56 -11.41 16 13 C -0.10 -3.84 1.84 -9.50 -0.02 -3.86 16 14 C -0.11 -4.00 5.52 31.74 0.18 -3.82 16 15 C -0.12 -3.29 6.81 31.39 0.21 -3.08 16 16 C -0.12 -2.92 6.80 31.32 0.21 -2.71 16 17 C -0.12 -3.60 5.98 31.67 0.19 -3.41 16 18 H 0.04 1.57 6.41 -2.39 -0.02 1.55 16 19 H 0.02 0.94 6.85 -2.39 -0.02 0.93 16 20 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 21 H 0.07 2.69 5.82 -2.38 -0.01 2.68 16 22 H 0.06 2.30 6.39 -2.39 -0.02 2.28 16 23 H 0.04 1.85 4.69 -2.39 -0.01 1.84 16 24 H 0.25 16.11 8.73 -92.71 -0.81 15.30 16 25 H 0.05 2.10 6.57 -2.39 -0.02 2.09 16 26 H 0.06 2.34 5.68 -2.39 -0.01 2.33 16 27 H 0.03 1.40 7.76 -2.39 -0.02 1.38 16 28 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 2.15 5.81 -2.39 -0.01 2.13 16 Total: -1.00 -63.56 240.57 4.68 -58.88 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 0.79 Total: 5.94 kcal Atomic # 6 Polarization: -46.30 SS G_CDS: 2.97 Total: -43.33 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.29 Total: -59.20 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -1.03 Total: -19.17 kcal Atomic # 14 Polarization: 55.22 SS G_CDS: 1.66 Total: 56.88 kcal Total: -63.56 4.68 -58.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261303514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.966 kcal (2) G-P(sol) polarization free energy of solvation -63.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds