Wall clock time and date at job start Mon Mar 30 2020 02:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99628 * 2 1 4 4 C 1.52998 * 109.47315 * 177.03648 * 3 2 1 5 5 C 1.50704 * 109.47165 * 57.03868 * 3 2 1 6 6 H 1.08002 * 119.99748 * 239.99708 * 5 3 2 7 7 C 1.37870 * 120.00016 * 59.99879 * 5 3 2 8 8 N 1.31518 * 120.00067 * 359.72244 * 7 5 3 9 9 Si 1.86803 * 119.99870 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47539 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47050 * 119.99962 * 9 7 5 12 12 H 1.48502 * 109.47020 * 239.99737 * 9 7 5 13 13 C 1.53000 * 109.47523 * 297.03808 * 3 2 1 14 14 C 1.54892 * 110.75393 * 292.84570 * 13 3 2 15 15 C 1.54271 * 104.19580 * 203.74102 * 14 13 3 16 16 C 1.53876 * 106.59756 * 23.60749 * 15 14 13 17 17 C 1.54269 * 106.59812 * 0.02562 * 16 15 14 18 18 H 1.09009 * 109.46888 * 182.45000 * 1 2 3 19 19 H 1.09002 * 109.46706 * 302.44049 * 1 2 3 20 20 H 1.08992 * 109.47569 * 62.44574 * 1 2 3 21 21 H 1.08998 * 109.47025 * 293.81029 * 4 3 2 22 22 H 1.09004 * 109.46758 * 53.80612 * 4 3 2 23 23 H 1.08999 * 109.47628 * 173.80508 * 4 3 2 24 24 H 0.96998 * 119.99862 * 180.02562 * 8 7 5 25 25 H 1.08998 * 110.67306 * 56.27637 * 13 3 2 26 26 H 1.09006 * 110.48543 * 322.41629 * 14 13 3 27 27 H 1.08995 * 110.48840 * 85.06581 * 14 13 3 28 28 H 1.08998 * 110.03569 * 264.32606 * 15 14 13 29 29 H 1.09001 * 110.07354 * 142.91559 * 15 14 13 30 30 H 1.08997 * 110.03776 * 240.71555 * 16 15 14 31 31 H 1.09004 * 110.03352 * 119.28369 * 16 15 14 32 32 H 1.09005 * 110.48371 * 217.70956 * 17 16 15 33 33 H 1.08994 * 110.48775 * 95.07257 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5336 1.1856 0.0746 5 6 1.5082 2.0788 1.1921 6 1 0.9643 3.0006 1.0478 7 6 1.7434 1.6095 2.4670 8 7 2.4010 0.4842 2.6426 9 14 1.1206 2.5677 3.9447 10 1 0.4108 3.7868 3.4808 11 1 0.1871 1.7186 4.7276 12 1 2.2692 2.9596 4.8004 13 6 1.6186 2.0381 -1.2848 14 6 2.2707 1.3678 -2.5195 15 6 2.3167 2.4887 -3.5784 16 6 2.2869 3.8213 -2.8095 17 6 2.2245 3.4636 -1.3102 18 1 -0.3633 -1.0268 0.0439 19 1 -0.3633 0.5513 0.8673 20 1 -0.3634 0.4753 -0.9110 21 1 3.8181 0.7634 1.0384 22 1 3.8864 0.5348 -0.7255 23 1 3.9817 2.1730 -0.0361 24 1 2.5661 0.1538 3.5396 25 1 0.5344 2.0769 -1.3905 26 1 3.2783 1.0269 -2.2808 27 1 1.6589 0.5367 -2.8701 28 1 1.4500 2.4174 -4.2355 29 1 3.2344 2.4148 -4.1619 30 1 1.4057 4.3966 -3.0934 31 1 3.1905 4.3936 -3.0191 32 1 1.5784 4.1618 -0.7780 33 1 3.2245 3.4615 -0.8765 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261303515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:29 Heat of formation + Delta-G solvation = -60.091334 kcal Electronic energy + Delta-G solvation = -13798.183405 eV Core-core repulsion = 11630.509592 eV Total energy + Delta-G solvation = -2167.673814 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.41572 -35.60354 -32.51927 -30.33922 -28.04683 -26.68218 -25.34524 -24.62327 -21.39256 -19.68190 -18.05593 -16.27406 -15.54539 -14.95419 -14.30283 -13.87505 -13.52276 -12.95236 -12.85190 -12.56290 -11.58719 -11.20463 -11.09756 -10.88522 -10.67971 -10.51721 -10.39065 -10.34023 -10.16164 -10.06343 -9.71211 -9.56046 -9.40614 -8.55298 -8.40501 -7.69656 -5.90951 -4.09440 3.28135 3.37235 3.40387 4.42188 5.18826 5.33102 5.35680 5.37608 5.72602 6.08038 6.13259 6.19149 6.29995 6.30613 6.50833 6.53157 6.58800 6.69331 6.72338 6.83700 6.88469 7.02945 7.07712 7.10189 7.22439 7.30368 7.60701 7.82547 8.16446 8.37746 8.88426 9.18437 9.63288 11.07971 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041797 B = 0.013173 C = 0.011837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.742079 B = 2125.064849 C = 2364.858657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 O -0.378 6.378 3 C 0.243 3.757 4 C -0.128 4.128 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.079 3.921 8 N -0.857 5.857 9 Si 0.881 3.119 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C -0.105 4.105 14 C -0.121 4.121 15 C -0.124 4.124 16 C -0.127 4.127 17 C -0.106 4.106 18 H 0.047 0.953 19 H 0.043 0.957 20 H 0.010 0.990 21 H 0.087 0.913 22 H 0.020 0.980 23 H 0.041 0.959 24 H 0.257 0.743 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.581 3.057 -7.035 7.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.297 6.297 3 C 0.205 3.795 4 C -0.185 4.185 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.126 4.126 8 N -0.494 5.494 9 Si 0.709 3.291 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.124 4.124 14 C -0.158 4.158 15 C -0.161 4.161 16 C -0.164 4.164 17 C -0.144 4.144 18 H 0.066 0.934 19 H 0.062 0.938 20 H 0.028 0.972 21 H 0.106 0.894 22 H 0.039 0.961 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.391 2.764 -6.907 7.450 hybrid contribution -0.645 0.789 0.857 1.331 sum -1.036 3.553 -6.051 7.093 Atomic orbital electron populations 1.22159 0.84972 0.98672 0.98572 1.87838 1.16684 1.30686 1.94492 1.18937 0.90900 0.80434 0.89253 1.21745 0.95802 0.98596 1.02327 1.21534 1.37122 1.08691 0.90958 0.92659 1.24987 0.94448 0.94495 0.98660 1.70005 1.38762 1.19329 1.21310 0.86734 0.78777 0.80297 0.83336 1.19803 1.21050 1.20978 1.22666 0.98553 0.94832 0.96373 1.22471 1.01508 0.96652 0.95168 1.22148 1.00228 0.95761 0.97988 1.22195 1.00277 0.96849 0.97108 1.22324 1.01557 0.96912 0.93589 0.93431 0.93843 0.97163 0.89450 0.96145 0.94063 0.93235 0.92264 0.91158 0.92831 0.92996 0.92925 0.92949 0.92884 0.92369 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.22 10.33 101.05 1.04 2.27 16 2 O -0.38 -9.83 9.60 -35.23 -0.34 -10.17 16 3 C 0.24 5.97 0.23 -91.77 -0.02 5.95 16 4 C -0.13 -3.09 7.95 37.16 0.30 -2.80 16 5 C -0.55 -14.50 6.05 -34.44 -0.21 -14.71 16 6 H 0.06 1.48 7.15 -52.49 -0.38 1.10 16 7 C 0.08 2.15 5.21 -17.82 -0.09 2.05 16 8 N -0.86 -24.30 10.85 55.43 0.60 -23.70 16 9 Si 0.88 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C -0.11 -2.22 2.02 -88.61 -0.18 -2.40 16 14 C -0.12 -2.25 6.01 -25.07 -0.15 -2.40 16 15 C -0.12 -1.93 6.80 -25.61 -0.17 -2.11 16 16 C -0.13 -2.00 6.80 -25.61 -0.17 -2.18 16 17 C -0.11 -2.03 5.44 -25.06 -0.14 -2.17 16 18 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 19 H 0.04 1.05 6.97 -51.93 -0.36 0.69 16 20 H 0.01 0.21 6.54 -51.93 -0.34 -0.13 16 21 H 0.09 2.36 5.94 -51.93 -0.31 2.06 16 22 H 0.02 0.45 6.35 -51.93 -0.33 0.12 16 23 H 0.04 0.93 5.94 -51.93 -0.31 0.62 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.06 1.28 6.56 -51.93 -0.34 0.94 16 26 H 0.07 1.35 5.69 -51.93 -0.30 1.06 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.13 7.73 -51.93 -0.40 0.73 16 33 H 0.07 1.40 5.82 -51.93 -0.30 1.09 16 LS Contribution 250.01 15.07 3.77 3.77 Total: -1.00 -28.19 250.01 -5.82 -34.01 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.03 Total: -1.38 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 0.20 Total: -18.48 kcal Atomic # 7 Polarization: -24.30 SS G_CDS: 0.60 Total: -23.70 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -0.34 Total: -10.17 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.19 -5.82 -34.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261303515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.078 kcal (2) G-P(sol) polarization free energy of solvation -28.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds