Wall clock time and date at job start Mon Mar 30 2020 02:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99628 * 2 1 4 4 C 1.52998 * 109.47315 * 177.03648 * 3 2 1 5 5 C 1.50704 * 109.47165 * 57.03868 * 3 2 1 6 6 H 1.08002 * 119.99748 * 239.99708 * 5 3 2 7 7 C 1.37870 * 120.00016 * 59.99879 * 5 3 2 8 8 N 1.31518 * 120.00067 * 359.72244 * 7 5 3 9 9 Si 1.86803 * 119.99870 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47539 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47050 * 119.99962 * 9 7 5 12 12 H 1.48502 * 109.47020 * 239.99737 * 9 7 5 13 13 C 1.53000 * 109.47523 * 297.03808 * 3 2 1 14 14 C 1.54892 * 110.75393 * 292.84570 * 13 3 2 15 15 C 1.54271 * 104.19580 * 203.74102 * 14 13 3 16 16 C 1.53876 * 106.59756 * 23.60749 * 15 14 13 17 17 C 1.54269 * 106.59812 * 0.02562 * 16 15 14 18 18 H 1.09009 * 109.46888 * 182.45000 * 1 2 3 19 19 H 1.09002 * 109.46706 * 302.44049 * 1 2 3 20 20 H 1.08992 * 109.47569 * 62.44574 * 1 2 3 21 21 H 1.08998 * 109.47025 * 293.81029 * 4 3 2 22 22 H 1.09004 * 109.46758 * 53.80612 * 4 3 2 23 23 H 1.08999 * 109.47628 * 173.80508 * 4 3 2 24 24 H 0.96998 * 119.99862 * 180.02562 * 8 7 5 25 25 H 1.08998 * 110.67306 * 56.27637 * 13 3 2 26 26 H 1.09006 * 110.48543 * 322.41629 * 14 13 3 27 27 H 1.08995 * 110.48840 * 85.06581 * 14 13 3 28 28 H 1.08998 * 110.03569 * 264.32606 * 15 14 13 29 29 H 1.09001 * 110.07354 * 142.91559 * 15 14 13 30 30 H 1.08997 * 110.03776 * 240.71555 * 16 15 14 31 31 H 1.09004 * 110.03352 * 119.28369 * 16 15 14 32 32 H 1.09005 * 110.48371 * 217.70956 * 17 16 15 33 33 H 1.08994 * 110.48775 * 95.07257 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5336 1.1856 0.0746 5 6 1.5082 2.0788 1.1921 6 1 0.9643 3.0006 1.0478 7 6 1.7434 1.6095 2.4670 8 7 2.4010 0.4842 2.6426 9 14 1.1206 2.5677 3.9447 10 1 0.4108 3.7868 3.4808 11 1 0.1871 1.7186 4.7276 12 1 2.2692 2.9596 4.8004 13 6 1.6186 2.0381 -1.2848 14 6 2.2707 1.3678 -2.5195 15 6 2.3167 2.4887 -3.5784 16 6 2.2869 3.8213 -2.8095 17 6 2.2245 3.4636 -1.3102 18 1 -0.3633 -1.0268 0.0439 19 1 -0.3633 0.5513 0.8673 20 1 -0.3634 0.4753 -0.9110 21 1 3.8181 0.7634 1.0384 22 1 3.8864 0.5348 -0.7255 23 1 3.9817 2.1730 -0.0361 24 1 2.5661 0.1538 3.5396 25 1 0.5344 2.0769 -1.3905 26 1 3.2783 1.0269 -2.2808 27 1 1.6589 0.5367 -2.8701 28 1 1.4500 2.4174 -4.2355 29 1 3.2344 2.4148 -4.1619 30 1 1.4057 4.3966 -3.0934 31 1 3.1905 4.3936 -3.0191 32 1 1.5784 4.1618 -0.7780 33 1 3.2245 3.4615 -0.8765 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261303515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:29 Heat of formation + Delta-G solvation = -76.295810 kcal Electronic energy + Delta-G solvation = -13798.886084 eV Core-core repulsion = 11630.509592 eV Total energy + Delta-G solvation = -2168.376492 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.10088 -37.29424 -34.55335 -32.13718 -29.48891 -28.34231 -27.32747 -26.51525 -23.14154 -21.02777 -19.80683 -18.26358 -17.19022 -16.72928 -16.07347 -15.58503 -15.40922 -14.57193 -14.48357 -14.20999 -13.40649 -13.04953 -12.91340 -12.72721 -12.36111 -12.20213 -12.12058 -11.94010 -11.84698 -11.67824 -11.33216 -11.16750 -11.01296 -10.56621 -10.36669 -9.61873 -7.97092 -6.21328 1.37831 1.41789 1.50814 2.43291 3.18640 3.70635 3.96489 4.02667 4.07751 4.59777 4.69169 4.72520 4.88401 4.92173 4.93239 4.96007 5.01530 5.08309 5.13502 5.20056 5.22855 5.31137 5.38505 5.52304 5.57609 5.63756 5.69975 5.76778 6.21446 6.35266 6.84390 7.23756 7.56262 9.00466 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041797 B = 0.013173 C = 0.011837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.742079 B = 2125.064849 C = 2364.858657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.404 6.404 3 C 0.233 3.767 4 C -0.121 4.121 5 C -0.550 4.550 6 H 0.048 0.952 7 C 0.034 3.966 8 N -0.887 5.887 9 Si 0.938 3.062 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.281 1.281 13 C -0.106 4.106 14 C -0.118 4.118 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.107 4.107 18 H 0.067 0.933 19 H 0.021 0.979 20 H 0.029 0.971 21 H 0.055 0.945 22 H 0.030 0.970 23 H 0.051 0.949 24 H 0.256 0.744 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.848 4.010 -8.347 9.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.323 6.323 3 C 0.195 3.805 4 C -0.178 4.178 5 C -0.588 4.588 6 H 0.067 0.933 7 C -0.168 4.168 8 N -0.524 5.524 9 Si 0.764 3.236 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.207 1.207 13 C -0.125 4.125 14 C -0.156 4.156 15 C -0.154 4.154 16 C -0.157 4.157 17 C -0.144 4.144 18 H 0.085 0.915 19 H 0.040 0.960 20 H 0.047 0.953 21 H 0.074 0.926 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.663 3.728 -8.227 9.056 hybrid contribution -0.580 0.469 1.263 1.467 sum -1.243 4.196 -6.964 8.225 Atomic orbital electron populations 1.22217 0.83635 0.99829 0.98456 1.87781 1.18266 1.31585 1.94690 1.19062 0.90776 0.80154 0.90485 1.21648 0.96134 0.99137 1.00876 1.21777 1.36559 1.08458 0.92041 0.93341 1.25628 0.94759 0.95289 1.01078 1.70138 1.39990 1.20695 1.21607 0.85843 0.78215 0.79142 0.80409 1.19332 1.21078 1.20670 1.22554 0.98282 0.95944 0.95687 1.22417 1.00502 0.97627 0.95037 1.22117 1.02055 0.93997 0.97264 1.22155 1.01970 0.97405 0.94183 1.22284 1.00361 0.95524 0.96251 0.91487 0.96042 0.95271 0.92567 0.95087 0.93040 0.93443 0.93092 0.92090 0.92979 0.91427 0.90944 0.91546 0.90997 0.93337 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.51 10.33 113.37 1.17 3.68 16 2 O -0.40 -21.01 9.60 -148.98 -1.43 -22.44 16 3 C 0.23 11.45 0.23 -11.54 0.00 11.45 16 4 C -0.12 -5.88 7.95 71.98 0.57 -5.31 16 5 C -0.55 -29.43 6.05 25.60 0.15 -29.27 16 6 H 0.05 2.60 7.15 -2.91 -0.02 2.57 16 7 C 0.03 1.88 5.21 84.65 0.44 2.33 16 8 N -0.89 -51.04 10.85 21.45 0.23 -50.81 16 9 Si 0.94 43.33 29.54 68.60 2.03 45.36 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 C -0.11 -4.33 2.02 -9.49 -0.02 -4.35 16 14 C -0.12 -4.17 6.01 31.67 0.19 -3.98 16 15 C -0.12 -3.23 6.80 31.32 0.21 -3.01 16 16 C -0.12 -3.37 6.80 31.32 0.21 -3.16 16 17 C -0.11 -3.91 5.44 31.68 0.17 -3.73 16 18 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 19 H 0.02 1.04 6.97 -2.39 -0.02 1.02 16 20 H 0.03 1.18 6.54 -2.39 -0.02 1.17 16 21 H 0.06 3.09 5.94 -2.39 -0.01 3.08 16 22 H 0.03 1.39 6.35 -2.38 -0.02 1.37 16 23 H 0.05 2.32 5.94 -2.39 -0.01 2.31 16 24 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 25 H 0.05 2.14 6.56 -2.39 -0.02 2.13 16 26 H 0.06 2.24 5.69 -2.38 -0.01 2.23 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.05 1.83 7.73 -2.38 -0.02 1.81 16 33 H 0.06 2.28 5.82 -2.39 -0.01 2.27 16 Total: -1.00 -59.47 250.01 5.01 -54.46 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.08 Total: 8.79 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 3.11 Total: -35.36 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.23 Total: -50.81 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -1.43 Total: -22.44 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -59.47 5.01 -54.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261303515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.833 kcal (2) G-P(sol) polarization free energy of solvation -59.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds