Wall clock time and date at job start Mon Mar 30 2020 02:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47183 * 2 1 4 4 C 1.42902 * 114.00367 * 175.04492 * 3 2 1 5 5 H 1.09000 * 109.46669 * 34.67039 * 4 3 2 6 6 C 1.50697 * 109.47145 * 154.67280 * 4 3 2 7 7 H 1.08001 * 120.00026 * 120.00145 * 6 4 3 8 8 C 1.37877 * 119.99734 * 299.99876 * 6 4 3 9 9 N 1.31518 * 120.00439 * 0.02562 * 8 6 4 10 10 Si 1.86806 * 119.99860 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46985 * 59.99920 * 10 8 6 12 12 H 1.48501 * 109.47073 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47249 * 300.00257 * 10 8 6 14 14 C 1.52994 * 109.47029 * 274.67339 * 4 3 2 15 15 C 1.53002 * 109.47392 * 302.26837 * 14 4 3 16 16 C 1.53782 * 113.61414 * 271.36359 * 15 14 4 17 17 C 1.53774 * 87.08268 * 220.01620 * 16 15 14 18 18 C 1.53779 * 113.61688 * 173.86767 * 15 14 4 19 19 H 1.08998 * 109.46905 * 299.99948 * 1 2 3 20 20 H 1.08996 * 109.47446 * 59.99615 * 1 2 3 21 21 H 1.08996 * 109.46835 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46905 * 240.00052 * 2 1 3 23 23 H 1.09000 * 109.47554 * 119.99633 * 2 1 3 24 24 H 0.96994 * 119.99752 * 180.02562 * 9 8 6 25 25 H 1.09003 * 109.47460 * 62.26569 * 14 4 3 26 26 H 1.08998 * 109.47424 * 182.27100 * 14 4 3 27 27 H 1.08999 * 112.85030 * 42.66751 * 15 14 4 28 28 H 1.08997 * 113.61167 * 334.56530 * 16 15 14 29 29 H 1.08998 * 113.61213 * 105.46794 * 16 15 14 30 30 H 1.08999 * 113.61690 * 270.88527 * 17 16 15 31 31 H 1.08996 * 113.61828 * 139.97778 * 17 16 15 32 32 H 1.09000 * 113.61195 * 254.52840 * 18 15 14 33 33 H 1.08995 * 113.61640 * 25.34595 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4263 1.4618 0.1128 5 1 3.9004 0.6320 -0.4113 6 6 3.8753 2.7641 -0.4983 7 1 4.3933 3.4940 0.1062 8 6 3.6248 3.0238 -1.8290 9 7 2.9936 2.1353 -2.5650 10 14 4.1820 4.6379 -2.5866 11 1 5.6577 4.7563 -2.4695 12 1 3.7954 4.6714 -4.0200 13 1 3.5366 5.7687 -1.8727 14 6 3.8251 1.4270 1.5894 15 6 3.1149 2.5578 2.3363 16 6 3.8966 3.8821 2.3365 17 6 3.4527 4.0531 3.7988 18 6 3.3305 2.5213 3.8585 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 2.8177 2.3179 -3.5012 25 1 3.5362 0.4688 2.0213 26 1 4.9039 1.5548 1.6776 27 1 2.0699 2.6662 2.0458 28 1 4.9727 3.7539 2.2190 29 1 3.4829 4.6334 1.6639 30 1 2.5002 4.5717 3.9081 31 1 4.2312 4.4546 4.4474 32 1 2.4597 2.1741 4.4146 33 1 4.2510 2.0199 4.1572 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261313194.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:57 Heat of formation + Delta-G solvation = -62.387910 kcal Electronic energy + Delta-G solvation = -13333.422257 eV Core-core repulsion = 11165.648856 eV Total energy + Delta-G solvation = -2167.773401 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.95204 -38.10236 -34.71581 -32.65618 -30.83824 -27.85262 -26.18265 -24.87259 -23.47185 -21.70359 -20.09156 -18.60249 -17.02269 -16.78493 -16.23208 -15.83425 -15.29451 -15.01520 -14.30775 -13.85166 -13.46289 -13.20617 -13.14517 -12.79178 -12.67051 -12.59799 -12.26516 -12.14565 -11.94192 -11.60075 -11.36090 -11.03378 -10.82746 -10.68919 -10.38657 -9.67292 -8.08265 -6.22931 1.41609 1.44004 1.50652 2.44243 3.09579 3.77181 3.92726 3.97951 4.04898 4.18039 4.29878 4.57085 4.66284 4.73154 4.81291 4.88790 4.93460 4.99732 5.01858 5.09127 5.17221 5.19888 5.30853 5.35434 5.38110 5.48496 5.64383 5.83238 5.88559 6.33299 6.82292 7.25622 7.50133 9.00383 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.022889 B = 0.015987 C = 0.010344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.026493 B = 1750.976375 C = 2706.197483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.055 3.945 3 O -0.388 6.388 4 C 0.214 3.786 5 H -0.026 1.026 6 C -0.531 4.531 7 H 0.078 0.922 8 C 0.020 3.980 9 N -0.905 5.905 10 Si 0.951 3.049 11 H -0.266 1.266 12 H -0.288 1.288 13 H -0.271 1.271 14 C -0.116 4.116 15 C -0.090 4.090 16 C -0.130 4.130 17 C -0.132 4.132 18 C -0.131 4.131 19 H 0.060 0.940 20 H 0.041 0.959 21 H 0.087 0.913 22 H 0.011 0.989 23 H 0.037 0.963 24 H 0.257 0.743 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.615 -0.108 9.564 9.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.023 4.023 3 O -0.308 6.308 4 C 0.158 3.842 5 H -0.008 1.008 6 C -0.569 4.569 7 H 0.096 0.904 8 C -0.181 4.181 9 N -0.543 5.543 10 Si 0.777 3.223 11 H -0.191 1.191 12 H -0.213 1.213 13 H -0.196 1.196 14 C -0.153 4.153 15 C -0.108 4.108 16 C -0.168 4.168 17 C -0.169 4.169 18 C -0.168 4.168 19 H 0.079 0.921 20 H 0.061 0.939 21 H 0.105 0.895 22 H 0.030 0.970 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.797 0.011 9.385 9.419 hybrid contribution 0.349 0.295 -1.055 1.150 sum -0.448 0.306 8.330 8.347 Atomic orbital electron populations 1.21630 0.93285 1.02422 1.01740 1.22278 0.96043 0.86564 0.97390 1.88093 1.24589 1.23948 1.94139 1.19597 0.78695 0.95066 0.90859 1.00837 1.21629 1.36366 1.04188 0.94680 0.90373 1.25890 0.94509 0.99642 0.98055 1.70156 1.40943 1.36142 1.07079 0.85731 0.79053 0.80457 0.77088 1.19067 1.21340 1.19631 1.21934 0.99244 0.97498 0.96666 1.22164 0.98917 0.95052 0.94691 1.22886 0.99589 0.97639 0.96641 1.22794 1.01669 0.96358 0.96115 1.22958 1.01937 0.96664 0.95281 0.92091 0.93946 0.89456 0.97048 0.94513 0.93427 0.93627 0.92367 0.91575 0.90851 0.93721 0.90234 0.90243 0.91253 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 10.28 71.98 0.74 -4.00 16 2 C 0.05 2.40 6.45 71.98 0.46 2.86 16 3 O -0.39 -20.47 8.50 -148.98 -1.27 -21.74 16 4 C 0.21 11.23 2.26 29.85 0.07 11.29 16 5 H -0.03 -1.51 7.89 -2.39 -0.02 -1.53 16 6 C -0.53 -29.64 8.13 25.60 0.21 -29.43 16 7 H 0.08 4.13 5.32 -2.91 -0.02 4.11 16 8 C 0.02 1.15 5.40 84.65 0.46 1.60 16 9 N -0.90 -54.87 12.84 21.45 0.28 -54.60 16 10 Si 0.95 44.57 29.54 68.60 2.03 46.59 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 14 C -0.12 -4.88 4.95 30.59 0.15 -4.73 16 15 C -0.09 -3.44 3.29 -10.27 -0.03 -3.47 16 16 C -0.13 -4.69 5.49 31.12 0.17 -4.52 16 17 C -0.13 -3.69 8.08 31.12 0.25 -3.43 16 18 C -0.13 -3.80 7.64 31.12 0.24 -3.56 16 19 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 20 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 22 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 23 H 0.04 1.45 7.46 -2.39 -0.02 1.44 16 24 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 25 H 0.05 1.77 7.52 -2.39 -0.02 1.75 16 26 H 0.06 2.37 7.82 -2.39 -0.02 2.35 16 27 H 0.07 2.87 7.40 -2.39 -0.02 2.85 16 28 H 0.07 2.61 7.78 -2.39 -0.02 2.59 16 29 H 0.04 1.78 7.88 -2.39 -0.02 1.76 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 2.25 8.10 -2.39 -0.02 2.23 16 Total: -1.00 -63.46 266.63 4.80 -58.66 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.05 Total: 8.48 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 2.71 Total: -37.40 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.28 Total: -54.60 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -1.27 Total: -21.74 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -63.46 4.80 -58.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261313194.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.724 kcal (2) G-P(sol) polarization free energy of solvation -63.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds