Wall clock time and date at job start Mon Mar 30 2020 02:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00336 * 2 1 4 4 C 1.53004 * 109.47373 * 175.73209 * 3 2 1 5 5 C 1.50698 * 109.46642 * 65.22069 * 4 3 2 6 6 H 1.08005 * 119.99690 * 234.53149 * 5 4 3 7 7 C 1.37879 * 120.00565 * 54.53184 * 5 4 3 8 8 N 1.31511 * 120.00328 * 200.24259 * 7 5 4 9 9 Si 1.86795 * 119.99496 * 20.23883 * 7 5 4 10 10 H 1.48505 * 109.47370 * 84.42617 * 9 7 5 11 11 H 1.48505 * 109.47180 * 204.42677 * 9 7 5 12 12 H 1.48501 * 109.47546 * 324.42526 * 9 7 5 13 13 C 1.52995 * 109.47101 * 305.21887 * 4 3 2 14 14 C 1.52998 * 109.47274 * 179.97438 * 13 4 3 15 15 C 1.52999 * 109.47003 * 59.99622 * 14 13 4 16 16 C 1.52996 * 109.47475 * 300.00679 * 15 14 13 17 17 C 1.52998 * 109.47559 * 59.99661 * 16 15 14 18 18 H 1.09003 * 109.47459 * 184.32523 * 1 2 3 19 19 H 1.09003 * 109.46925 * 304.32665 * 1 2 3 20 20 H 1.09003 * 109.47125 * 64.32306 * 1 2 3 21 21 H 1.08997 * 109.47321 * 295.73620 * 3 2 1 22 22 H 1.09009 * 109.46948 * 55.73794 * 3 2 1 23 23 H 0.97001 * 120.00317 * 180.02562 * 8 7 5 24 24 H 1.09002 * 109.47267 * 299.99813 * 13 4 3 25 25 H 1.09004 * 109.47126 * 59.99621 * 13 4 3 26 26 H 1.09002 * 109.47054 * 300.00229 * 14 13 4 27 27 H 1.08994 * 109.47789 * 179.97438 * 14 13 4 28 28 H 1.09001 * 109.47419 * 179.97438 * 15 14 13 29 29 H 1.09004 * 109.47229 * 60.00492 * 15 14 13 30 30 H 1.09002 * 109.46921 * 299.99601 * 16 15 14 31 31 H 1.09004 * 109.47187 * 179.97438 * 16 15 14 32 32 H 1.08997 * 109.47448 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.47054 * 60.00020 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5318 1.1862 0.1074 5 6 4.0714 0.5146 -1.1291 6 1 4.6917 -0.3650 -1.0388 7 6 3.7734 1.0229 -2.3756 8 7 3.8855 0.2599 -3.4409 9 14 3.2104 2.7952 -2.5512 10 1 4.3959 3.6874 -2.6143 11 1 2.4145 2.9408 -3.7965 12 1 2.3730 3.1668 -1.3824 13 6 3.8925 0.3531 1.3389 14 6 5.4140 0.2334 1.4459 15 6 6.0275 1.6289 1.5766 16 6 5.6667 2.4620 0.3450 17 6 4.1452 2.5817 0.2380 18 1 -0.3634 -1.0247 0.0775 19 1 -0.3633 0.5795 0.8487 20 1 -0.3633 0.4453 -0.9262 21 1 1.7504 1.8188 -0.9257 22 1 1.6295 1.8726 0.8494 23 1 3.6762 0.6176 -4.3179 24 1 3.5021 0.8389 2.2332 25 1 3.4558 -0.6412 1.2456 26 1 5.8040 -0.2526 0.5516 27 1 5.6711 -0.3597 2.3236 28 1 7.1114 1.5436 1.6533 29 1 5.6375 2.1150 2.4709 30 1 6.0567 1.9760 -0.5493 31 1 6.1034 3.4563 0.4383 32 1 3.8883 3.1756 -0.6391 33 1 3.7552 3.0677 1.1323 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261318103.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:07 Heat of formation + Delta-G solvation = -47.468219 kcal Electronic energy + Delta-G solvation = -13885.877467 eV Core-core repulsion = 11718.751033 eV Total energy + Delta-G solvation = -2167.126434 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.55064 -36.29405 -32.60978 -30.81899 -29.91144 -26.34946 -24.78352 -24.22040 -21.84019 -20.25216 -18.61030 -16.03222 -15.45472 -15.21492 -14.81636 -14.38269 -13.61838 -13.34643 -13.09559 -12.40936 -12.30496 -11.84723 -11.43374 -11.30250 -11.06795 -10.68167 -10.37985 -10.29769 -9.99223 -9.84667 -9.78525 -9.18539 -8.96060 -8.76158 -8.27328 -8.12709 -6.02263 -3.89110 3.26055 3.35267 3.42060 4.45826 4.73974 5.26593 5.62109 5.67071 5.73848 5.81180 5.92644 6.10892 6.16539 6.24042 6.31089 6.35423 6.40739 6.46997 6.49869 6.60153 6.69028 6.75352 6.89226 7.12538 7.15772 7.26210 7.37273 7.51246 7.90335 8.19168 8.65579 9.07422 9.65921 11.11653 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.025589 B = 0.020873 C = 0.014943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.949347 B = 1341.125701 C = 1873.333194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.066 3.934 4 C 0.046 3.954 5 C -0.486 4.486 6 H 0.076 0.924 7 C 0.076 3.924 8 N -0.888 5.888 9 Si 0.861 3.139 10 H -0.282 1.282 11 H -0.303 1.303 12 H -0.253 1.253 13 C -0.086 4.086 14 C -0.112 4.112 15 C -0.109 4.109 16 C -0.107 4.107 17 C -0.114 4.114 18 H 0.075 0.925 19 H 0.026 0.974 20 H 0.030 0.970 21 H 0.046 0.954 22 H 0.014 0.986 23 H 0.260 0.740 24 H 0.031 0.969 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.734 3.474 7.956 8.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.010 4.010 4 C 0.045 3.955 5 C -0.523 4.523 6 H 0.094 0.906 7 C -0.126 4.126 8 N -0.526 5.526 9 Si 0.693 3.307 10 H -0.209 1.209 11 H -0.231 1.231 12 H -0.179 1.179 13 C -0.124 4.124 14 C -0.150 4.150 15 C -0.147 4.147 16 C -0.145 4.145 17 C -0.151 4.151 18 H 0.094 0.906 19 H 0.045 0.955 20 H 0.049 0.951 21 H 0.064 0.936 22 H 0.033 0.967 23 H 0.070 0.930 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.628 3.276 7.749 8.570 hybrid contribution -0.634 1.369 -0.339 1.546 sum -2.262 4.645 7.411 9.034 Atomic orbital electron populations 1.22614 0.83978 1.01346 0.98708 1.88004 1.16744 1.28526 1.94941 1.23302 0.96727 0.83257 0.97749 1.18503 0.88878 0.92099 0.96058 1.20692 1.31427 1.12497 0.87724 0.90575 1.24913 0.94758 0.96767 0.96138 1.70028 1.48959 1.34716 0.98885 0.87739 0.78974 0.87916 0.76083 1.20922 1.23147 1.17921 1.21272 0.94656 1.00351 0.96117 1.21479 0.96754 0.95943 1.00789 1.21434 0.98777 0.96796 0.97653 1.21381 0.96039 0.97812 0.99229 1.21937 0.96100 0.98461 0.98608 0.90635 0.95524 0.95130 0.93582 0.96748 0.92989 0.95013 0.91945 0.90708 0.94239 0.93415 0.93570 0.90198 0.94286 0.93667 0.94552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.36 -8.35 9.57 -35.23 -0.34 -8.69 16 3 C 0.07 1.51 4.19 37.16 0.16 1.66 16 4 C 0.05 1.06 0.34 -155.66 -0.05 1.00 16 5 C -0.49 -13.27 6.53 -34.44 -0.22 -13.49 16 6 H 0.08 2.27 6.76 -52.48 -0.35 1.92 16 7 C 0.08 2.16 5.24 -17.82 -0.09 2.06 16 8 N -0.89 -27.14 13.96 55.43 0.77 -26.36 16 9 Si 0.86 21.49 23.02 -169.99 -3.91 17.57 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 12 H -0.25 -5.84 4.54 56.52 0.26 -5.59 16 13 C -0.09 -1.80 4.50 -26.73 -0.12 -1.93 16 14 C -0.11 -2.14 5.70 -26.73 -0.15 -2.29 16 15 C -0.11 -1.91 5.92 -26.73 -0.16 -2.07 16 16 C -0.11 -2.12 5.70 -26.73 -0.15 -2.27 16 17 C -0.11 -2.44 4.10 -26.73 -0.11 -2.55 16 18 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 19 H 0.03 0.41 8.13 -51.93 -0.42 -0.01 16 20 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 1.11 3.83 -51.93 -0.20 0.91 16 22 H 0.01 0.30 8.13 -51.92 -0.42 -0.12 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 1.38 7.55 -51.93 -0.39 0.99 16 26 H 0.07 1.58 6.52 -51.93 -0.34 1.24 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.76 7.22 -51.93 -0.37 1.39 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 1.02 2.71 -51.93 -0.14 0.88 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 242.84 15.07 3.66 3.66 Total: -1.00 -29.73 242.84 -4.92 -34.65 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -5.31 Total: -2.62 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 0.20 Total: -18.21 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.77 Total: -26.36 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.34 Total: -8.69 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -3.91 Total: 17.57 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.73 -4.92 -34.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261318103.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.820 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds