Wall clock time and date at job start Mon Mar 30 2020 02:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00336 * 2 1 4 4 C 1.53004 * 109.47373 * 175.73209 * 3 2 1 5 5 C 1.50698 * 109.46642 * 65.22069 * 4 3 2 6 6 H 1.08005 * 119.99690 * 234.53149 * 5 4 3 7 7 C 1.37879 * 120.00565 * 54.53184 * 5 4 3 8 8 N 1.31511 * 120.00328 * 200.24259 * 7 5 4 9 9 Si 1.86795 * 119.99496 * 20.23883 * 7 5 4 10 10 H 1.48505 * 109.47370 * 84.42617 * 9 7 5 11 11 H 1.48505 * 109.47180 * 204.42677 * 9 7 5 12 12 H 1.48501 * 109.47546 * 324.42526 * 9 7 5 13 13 C 1.52995 * 109.47101 * 305.21887 * 4 3 2 14 14 C 1.52998 * 109.47274 * 179.97438 * 13 4 3 15 15 C 1.52999 * 109.47003 * 59.99622 * 14 13 4 16 16 C 1.52996 * 109.47475 * 300.00679 * 15 14 13 17 17 C 1.52998 * 109.47559 * 59.99661 * 16 15 14 18 18 H 1.09003 * 109.47459 * 184.32523 * 1 2 3 19 19 H 1.09003 * 109.46925 * 304.32665 * 1 2 3 20 20 H 1.09003 * 109.47125 * 64.32306 * 1 2 3 21 21 H 1.08997 * 109.47321 * 295.73620 * 3 2 1 22 22 H 1.09009 * 109.46948 * 55.73794 * 3 2 1 23 23 H 0.97001 * 120.00317 * 180.02562 * 8 7 5 24 24 H 1.09002 * 109.47267 * 299.99813 * 13 4 3 25 25 H 1.09004 * 109.47126 * 59.99621 * 13 4 3 26 26 H 1.09002 * 109.47054 * 300.00229 * 14 13 4 27 27 H 1.08994 * 109.47789 * 179.97438 * 14 13 4 28 28 H 1.09001 * 109.47419 * 179.97438 * 15 14 13 29 29 H 1.09004 * 109.47229 * 60.00492 * 15 14 13 30 30 H 1.09002 * 109.46921 * 299.99601 * 16 15 14 31 31 H 1.09004 * 109.47187 * 179.97438 * 16 15 14 32 32 H 1.08997 * 109.47448 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.47054 * 60.00020 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5318 1.1862 0.1074 5 6 4.0714 0.5146 -1.1291 6 1 4.6917 -0.3650 -1.0388 7 6 3.7734 1.0229 -2.3756 8 7 3.8855 0.2599 -3.4409 9 14 3.2104 2.7952 -2.5512 10 1 4.3959 3.6874 -2.6143 11 1 2.4145 2.9408 -3.7965 12 1 2.3730 3.1668 -1.3824 13 6 3.8925 0.3531 1.3389 14 6 5.4140 0.2334 1.4459 15 6 6.0275 1.6289 1.5766 16 6 5.6667 2.4620 0.3450 17 6 4.1452 2.5817 0.2380 18 1 -0.3634 -1.0247 0.0775 19 1 -0.3633 0.5795 0.8487 20 1 -0.3633 0.4453 -0.9262 21 1 1.7504 1.8188 -0.9257 22 1 1.6295 1.8726 0.8494 23 1 3.6762 0.6176 -4.3179 24 1 3.5021 0.8389 2.2332 25 1 3.4558 -0.6412 1.2456 26 1 5.8040 -0.2526 0.5516 27 1 5.6711 -0.3597 2.3236 28 1 7.1114 1.5436 1.6533 29 1 5.6375 2.1150 2.4709 30 1 6.0567 1.9760 -0.5493 31 1 6.1034 3.4563 0.4383 32 1 3.8883 3.1756 -0.6391 33 1 3.7552 3.0677 1.1323 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261318103.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:06 Heat of formation + Delta-G solvation = -67.568555 kcal Electronic energy + Delta-G solvation = -13886.749083 eV Core-core repulsion = 11718.751033 eV Total energy + Delta-G solvation = -2167.998050 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.24587 -37.91825 -34.59023 -32.63225 -31.51001 -27.84730 -26.83192 -25.86440 -23.44758 -21.86740 -20.45499 -17.90799 -17.30394 -16.91980 -16.42998 -16.11388 -15.32601 -15.02045 -14.67307 -14.21232 -14.10277 -13.46760 -13.12742 -12.92118 -12.66213 -12.37072 -12.12170 -12.03579 -11.68168 -11.53949 -11.51948 -10.87626 -10.72347 -10.50672 -10.29833 -9.92103 -8.21827 -6.10520 1.28397 1.33789 1.42049 2.37580 3.11617 3.19194 4.06887 4.14067 4.20922 4.40244 4.49890 4.57926 4.60284 4.68853 4.75887 4.82350 4.84933 4.91516 4.96135 5.01017 5.06484 5.20118 5.28318 5.52300 5.56648 5.62534 5.75294 5.83563 5.92142 6.45449 6.61779 6.88719 7.47111 8.96245 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.025589 B = 0.020873 C = 0.014943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.949347 B = 1341.125701 C = 1873.333194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.064 3.936 4 C 0.036 3.964 5 C -0.471 4.471 6 H 0.031 0.969 7 C 0.017 3.983 8 N -0.946 5.946 9 Si 0.915 3.085 10 H -0.277 1.277 11 H -0.316 1.316 12 H -0.216 1.216 13 C -0.083 4.083 14 C -0.112 4.112 15 C -0.103 4.103 16 C -0.110 4.110 17 C -0.116 4.116 18 H 0.093 0.907 19 H 0.055 0.945 20 H 0.028 0.972 21 H 0.029 0.971 22 H 0.047 0.953 23 H 0.258 0.742 24 H 0.061 0.939 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.385 5.514 10.672 12.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.318 6.318 3 C -0.012 4.012 4 C 0.035 3.965 5 C -0.509 4.509 6 H 0.049 0.951 7 C -0.179 4.179 8 N -0.586 5.586 9 Si 0.745 3.255 10 H -0.204 1.204 11 H -0.245 1.245 12 H -0.140 1.140 13 C -0.121 4.121 14 C -0.150 4.150 15 C -0.140 4.140 16 C -0.148 4.148 17 C -0.153 4.153 18 H 0.112 0.888 19 H 0.073 0.927 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.286 5.327 10.506 11.999 hybrid contribution -0.429 0.596 -1.139 1.355 sum -2.715 5.924 9.367 11.410 Atomic orbital electron populations 1.22872 0.81379 1.03242 0.99843 1.87960 1.19755 1.28892 1.95166 1.23242 0.96217 0.83621 0.98143 1.18611 0.89598 0.93519 0.94774 1.20896 1.29470 1.10762 0.89799 0.95101 1.25662 0.95689 1.00769 0.95813 1.70182 1.52160 1.36849 0.99444 0.86838 0.79137 0.82847 0.76671 1.20357 1.24506 1.14029 1.21221 0.95797 0.98951 0.96119 1.21453 0.95651 0.97576 1.00282 1.21409 1.00045 0.95060 0.97494 1.21392 0.95144 0.99411 0.98831 1.21925 0.97086 0.96731 0.99567 0.88820 0.92660 0.95294 0.95311 0.93469 0.93356 0.92076 0.94297 0.94372 0.91563 0.91535 0.90749 0.93948 0.91547 0.94937 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 11.01 113.37 1.25 2.01 16 2 O -0.40 -17.81 9.57 -148.98 -1.43 -19.23 16 3 C 0.06 2.76 4.19 71.98 0.30 3.06 16 4 C 0.04 1.61 0.34 -52.93 -0.02 1.59 16 5 C -0.47 -26.46 6.53 25.60 0.17 -26.29 16 6 H 0.03 1.96 6.76 -2.91 -0.02 1.94 16 7 C 0.02 0.98 5.24 84.66 0.44 1.43 16 8 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 9 Si 0.92 44.50 23.02 68.60 1.58 46.08 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.32 -15.86 7.11 99.48 0.71 -15.15 16 12 H -0.22 -9.20 4.54 99.48 0.45 -8.75 16 13 C -0.08 -3.31 4.50 30.59 0.14 -3.18 16 14 C -0.11 -4.08 5.70 30.59 0.17 -3.91 16 15 C -0.10 -3.23 5.92 30.59 0.18 -3.05 16 16 C -0.11 -4.06 5.70 30.59 0.17 -3.89 16 17 C -0.12 -4.57 4.10 30.59 0.13 -4.45 16 18 H 0.09 2.69 8.14 -2.39 -0.02 2.68 16 19 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 20 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 21 H 0.03 1.33 3.83 -2.39 -0.01 1.32 16 22 H 0.05 1.72 8.13 -2.38 -0.02 1.71 16 23 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 24 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.04 1.70 7.55 -2.38 -0.02 1.68 16 26 H 0.04 1.65 6.52 -2.39 -0.02 1.63 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.04 1.86 7.22 -2.39 -0.02 1.84 16 31 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.03 1.36 2.71 -2.39 -0.01 1.36 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -66.82 242.84 4.20 -62.62 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.82 Total: 7.47 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 2.94 Total: -36.66 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.30 Total: -60.27 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -1.43 Total: -19.23 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.58 Total: 46.08 kcal Total: -66.82 4.20 -62.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261318103.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.948 kcal (2) G-P(sol) polarization free energy of solvation -66.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds