Wall clock time and date at job start Mon Mar 30 2020 02:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99965 * 2 1 4 4 C 1.52995 * 109.47493 * 301.74815 * 3 2 1 5 5 C 1.50700 * 109.47352 * 301.88938 * 4 3 2 6 6 H 1.08000 * 119.99778 * 5.17136 * 5 4 3 7 7 C 1.37874 * 120.00129 * 185.16577 * 5 4 3 8 8 N 1.31519 * 120.00028 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00002 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47235 * 89.99716 * 9 7 5 11 11 H 1.48501 * 109.46928 * 210.00180 * 9 7 5 12 12 H 1.48502 * 109.46653 * 329.99709 * 9 7 5 13 13 C 1.53004 * 109.47116 * 181.74768 * 3 2 1 14 14 C 1.53004 * 109.46994 * 300.00308 * 13 3 2 15 15 C 1.53004 * 109.47120 * 300.00005 * 14 13 3 16 16 C 1.53004 * 109.47191 * 60.00115 * 15 14 13 17 17 C 1.53004 * 109.46870 * 61.74842 * 3 2 1 18 18 H 1.08998 * 109.46890 * 297.75714 * 1 2 3 19 19 H 1.09000 * 109.47160 * 57.75781 * 1 2 3 20 20 H 1.08996 * 109.47459 * 177.75609 * 1 2 3 21 21 H 1.09002 * 109.46808 * 61.88839 * 4 3 2 22 22 H 1.09001 * 109.47388 * 181.88626 * 4 3 2 23 23 H 0.96996 * 119.99770 * 179.97438 * 8 7 5 24 24 H 1.09004 * 109.46815 * 180.02562 * 13 3 2 25 25 H 1.08993 * 109.46930 * 60.00247 * 13 3 2 26 26 H 1.08997 * 109.47229 * 59.99730 * 14 13 3 27 27 H 1.08993 * 109.46904 * 179.97438 * 14 13 3 28 28 H 1.09006 * 109.46844 * 179.97438 * 15 14 13 29 29 H 1.08997 * 109.46845 * 299.99960 * 15 14 13 30 30 H 1.09004 * 109.46815 * 59.99762 * 16 15 14 31 31 H 1.08993 * 109.46930 * 180.02562 * 16 15 14 32 32 H 1.08993 * 109.47268 * 299.99944 * 17 3 2 33 33 H 1.08995 * 109.47116 * 179.97438 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5243 2.0801 -1.2266 5 6 1.8938 1.3244 -2.4769 6 1 2.3472 0.3470 -2.4029 7 6 1.6529 1.8806 -3.7153 8 7 1.1002 3.0706 -3.8053 9 14 2.1103 0.9435 -5.2651 10 1 0.9620 0.1052 -5.6938 11 1 2.4503 1.9062 -6.3435 12 1 3.2824 0.0741 -4.9900 13 6 3.5349 1.1849 -0.0440 14 6 4.0208 0.4102 1.1827 15 6 3.6044 1.1538 2.4534 16 6 2.0798 1.2743 2.4974 17 6 1.5938 2.0491 1.2707 18 1 -0.3633 0.4786 0.9094 19 1 -0.3633 0.5483 -0.8692 20 1 -0.3634 -1.0268 -0.0402 21 1 0.4415 2.1951 -1.1782 22 1 1.9936 3.0638 -1.2445 23 1 0.9311 3.4621 -4.6765 24 1 3.9782 2.1807 -0.0435 25 1 3.8314 0.6552 -0.9492 26 1 3.5774 -0.5855 1.1827 27 1 5.1069 0.3240 1.1511 28 1 3.9502 0.6016 3.3273 29 1 4.0478 2.1495 2.4534 30 1 1.6365 0.2785 2.4973 31 1 1.7832 1.8044 3.4024 32 1 0.5077 2.1349 1.3021 33 1 2.0375 3.0446 1.2710 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261320846.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:02 Heat of formation + Delta-G solvation = -92.359748 kcal Electronic energy + Delta-G solvation = -13627.904916 eV Core-core repulsion = 11458.831839 eV Total energy + Delta-G solvation = -2169.073077 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.62901 -36.59843 -35.09280 -32.30073 -31.62116 -28.74676 -27.22309 -25.14653 -23.34577 -21.63456 -20.31936 -18.41119 -16.95542 -16.76475 -16.14695 -15.75994 -15.65282 -14.63056 -14.35494 -14.23818 -13.63089 -13.39943 -13.13327 -12.96997 -12.80053 -12.59280 -12.33020 -12.14198 -11.86274 -11.78870 -11.45980 -11.32769 -10.98913 -10.62342 -10.45185 -9.92895 -8.17114 -6.23840 1.38273 1.38573 1.50195 2.41595 3.12292 3.22329 3.93219 4.00004 4.08103 4.42139 4.44943 4.56429 4.63696 4.71496 4.74862 4.77003 4.89605 4.96845 5.03057 5.17672 5.22552 5.32529 5.35878 5.41998 5.45703 5.52155 5.64165 5.73233 5.82966 6.28416 6.66777 6.90717 7.43005 8.94760 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047033 B = 0.010967 C = 0.010496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.188552 B = 2552.396723 C = 2666.926814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.126 3.874 4 C 0.006 3.994 5 C -0.509 4.509 6 H 0.056 0.944 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.266 1.266 13 C -0.094 4.094 14 C -0.111 4.111 15 C -0.113 4.113 16 C -0.107 4.107 17 C -0.142 4.142 18 H 0.047 0.953 19 H 0.022 0.978 20 H 0.092 0.908 21 H -0.007 1.007 22 H -0.002 1.002 23 H 0.261 0.739 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.688 -4.296 11.046 12.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.087 3.913 4 C -0.031 4.031 5 C -0.547 4.547 6 H 0.074 0.926 7 C -0.198 4.198 8 N -0.577 5.577 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.190 1.190 13 C -0.132 4.132 14 C -0.148 4.148 15 C -0.150 4.150 16 C -0.145 4.145 17 C -0.180 4.180 18 H 0.065 0.935 19 H 0.041 0.959 20 H 0.110 0.890 21 H 0.011 0.989 22 H 0.016 0.984 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.753 -4.340 10.928 12.076 hybrid contribution -0.373 0.245 -1.378 1.449 sum 2.380 -4.096 9.550 10.660 Atomic orbital electron populations 1.22662 0.82003 1.02295 0.99422 1.87769 1.19507 1.28180 1.94879 1.21472 0.93793 0.82855 0.93185 1.19583 0.94814 0.94978 0.93731 1.21407 1.38889 1.02941 0.91428 0.92567 1.25869 0.95589 0.95845 1.02520 1.70092 1.45288 1.17366 1.24963 0.85582 0.78834 0.78427 0.79051 1.20142 1.20847 1.19023 1.21377 0.92703 1.00357 0.98718 1.21471 1.00303 0.99084 0.93967 1.21516 0.95381 1.00621 0.97475 1.21420 0.96452 1.00175 0.96416 1.22113 1.00598 0.99531 0.95734 0.93492 0.95915 0.88979 0.98894 0.98350 0.93057 0.91924 0.93219 0.92389 0.91163 0.90235 0.91904 0.92185 0.90663 0.92637 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.22 10.21 113.37 1.16 2.38 16 2 O -0.38 -16.17 8.44 -148.98 -1.26 -17.43 16 3 C 0.13 5.30 0.36 -10.79 0.00 5.30 16 4 C 0.01 0.32 3.54 29.85 0.11 0.43 16 5 C -0.51 -29.18 7.95 25.60 0.20 -28.98 16 6 H 0.06 3.23 6.87 -2.91 -0.02 3.21 16 7 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 8 N -0.94 -57.50 13.29 21.45 0.28 -57.22 16 9 Si 0.96 45.54 29.54 68.60 2.03 47.57 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 C -0.09 -3.68 4.72 30.60 0.14 -3.53 16 14 C -0.11 -3.36 5.78 30.60 0.18 -3.19 16 15 C -0.11 -2.87 5.92 30.60 0.18 -2.69 16 16 C -0.11 -2.95 5.78 30.60 0.18 -2.77 16 17 C -0.14 -4.94 4.40 30.60 0.13 -4.80 16 18 H 0.05 1.53 6.57 -2.39 -0.02 1.51 16 19 H 0.02 0.98 6.31 -2.39 -0.02 0.97 16 20 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 21 H -0.01 -0.41 6.57 -2.39 -0.02 -0.42 16 22 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 23 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 24 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.05 2.18 6.85 -2.39 -0.02 2.16 16 26 H 0.06 1.86 7.68 -2.39 -0.02 1.84 16 27 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.71 7.68 -2.39 -0.02 1.69 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.93 6.62 -2.39 -0.02 1.91 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -64.21 255.30 4.85 -59.36 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.06 Total: 5.19 kcal Atomic # 6 Polarization: -40.22 SS G_CDS: 2.74 Total: -37.48 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.28 Total: -57.22 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -1.26 Total: -17.43 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -64.21 4.85 -59.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261320846.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.997 kcal (2) G-P(sol) polarization free energy of solvation -64.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds