Wall clock time and date at job start Mon Mar 30 2020 02:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47306 * 2 1 4 4 C 1.53002 * 109.47309 * 239.99864 * 2 1 3 5 5 C 1.53004 * 109.46936 * 300.00482 * 4 2 1 6 6 C 1.53002 * 109.46991 * 299.99556 * 5 4 2 7 7 C 1.53004 * 109.46746 * 60.00096 * 6 5 4 8 8 H 1.08998 * 109.46791 * 60.00582 * 7 6 5 9 9 C 1.53002 * 109.46746 * 180.02562 * 7 6 5 10 10 O 1.42905 * 109.47079 * 294.99927 * 9 7 6 11 11 C 1.34930 * 116.99582 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00365 * 359.97438 * 11 10 9 13 13 C 1.38636 * 119.99370 * 180.02562 * 11 10 9 14 14 N 1.31589 * 119.99721 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00453 * 359.97438 * 13 11 10 16 16 H 1.48492 * 109.47238 * 89.99904 * 15 13 11 17 17 H 1.48500 * 109.47276 * 210.00398 * 15 13 11 18 18 H 1.48497 * 109.46816 * 329.99889 * 15 13 11 19 19 C 1.52994 * 109.47325 * 299.99726 * 7 6 5 20 20 H 1.08996 * 109.47287 * 300.00374 * 1 2 3 21 21 H 1.09001 * 109.46765 * 60.00149 * 1 2 3 22 22 H 1.08990 * 109.47275 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46743 * 60.00024 * 4 2 1 24 24 H 1.08994 * 109.47199 * 180.02562 * 4 2 1 25 25 H 1.08994 * 109.47423 * 59.99836 * 5 4 2 26 26 H 1.08996 * 109.47141 * 180.02562 * 5 4 2 27 27 H 1.08998 * 109.47000 * 300.00806 * 6 5 4 28 28 H 1.09000 * 109.47089 * 180.02562 * 6 5 4 29 29 H 1.09004 * 109.46930 * 175.00154 * 9 7 6 30 30 H 1.09000 * 109.47312 * 55.00097 * 9 7 6 31 31 H 0.96994 * 119.99898 * 180.02562 * 14 13 11 32 32 H 1.09004 * 109.47054 * 179.97438 * 19 7 6 33 33 H 1.08994 * 109.47401 * 300.00157 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5299 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2492 9 6 2.0405 -2.8846 2.4985 10 8 1.4711 -4.1939 2.5590 11 6 1.8215 -4.9663 3.6085 12 1 2.5040 -4.5866 4.3544 13 6 1.3061 -6.2476 3.7285 14 7 1.6474 -7.0008 4.7522 15 14 0.1261 -6.9047 2.4380 16 1 0.8950 -7.5824 1.3635 17 1 -0.8056 -7.8747 3.0673 18 1 -0.6491 -5.7790 1.8574 19 6 2.0400 -0.7213 1.2493 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.6767 -0.2074 -2.1392 24 1 3.1300 -0.7217 -1.2490 25 1 0.4400 -2.1638 -1.2493 26 1 1.8937 -2.6778 -2.1389 27 1 3.1299 -2.8850 0.0001 28 1 1.6769 -3.9128 -0.0002 29 1 1.7521 -2.3216 3.3862 30 1 3.1268 -2.9624 2.4547 31 1 1.2871 -7.8974 4.8361 32 1 1.6763 -0.2073 2.1390 33 1 3.1300 -0.7213 1.2493 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300745421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:02 Heat of formation + Delta-G solvation = -69.772368 kcal Electronic energy + Delta-G solvation = -13126.369914 eV Core-core repulsion = 10958.276299 eV Total energy + Delta-G solvation = -2168.093615 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.08416 -36.26067 -32.36537 -31.50468 -31.02053 -26.64910 -25.69543 -23.42905 -22.05002 -20.59284 -18.45443 -17.44586 -15.55136 -15.33995 -14.65558 -14.21505 -13.78437 -13.68223 -13.28187 -12.72046 -12.44432 -12.19469 -11.79714 -11.50865 -11.31687 -11.06926 -10.92353 -10.83510 -10.68024 -10.09516 -9.98789 -9.71115 -9.62066 -9.39913 -9.17232 -8.10223 -5.94493 -3.60951 3.45065 3.47757 3.64895 4.61001 4.77835 4.86446 4.92656 5.25030 5.33291 5.41372 5.48927 5.52596 5.68144 5.75826 5.81554 5.89011 5.96883 5.99753 6.10800 6.17844 6.21690 6.32397 6.39785 6.45897 6.52483 6.59765 6.68048 6.85404 6.92433 7.98396 8.42294 9.46076 10.03874 11.18700 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053097 B = 0.008943 C = 0.008396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.208998 B = 3130.336289 C = 3334.011026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 H 0.064 0.936 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.110 4.110 7 C -0.086 4.086 8 H 0.075 0.925 9 C 0.088 3.912 10 O -0.333 6.333 11 C -0.353 4.353 12 H 0.077 0.923 13 C 0.041 3.959 14 N -0.916 5.916 15 Si 0.906 3.094 16 H -0.282 1.282 17 H -0.292 1.292 18 H -0.265 1.265 19 C -0.107 4.107 20 H 0.052 0.948 21 H 0.048 0.952 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.268 0.732 32 H 0.060 0.940 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 12.810 -11.217 17.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.147 4.147 7 C -0.104 4.104 8 H 0.093 0.907 9 C 0.011 3.989 10 O -0.249 6.249 11 C -0.432 4.432 12 H 0.094 0.906 13 C -0.155 4.155 14 N -0.562 5.562 15 Si 0.734 3.266 16 H -0.208 1.208 17 H -0.218 1.218 18 H -0.189 1.189 19 C -0.144 4.144 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.916 12.608 -11.306 16.959 hybrid contribution -0.290 -0.324 -0.243 0.498 sum -1.206 12.283 -11.549 16.903 Atomic orbital electron populations 1.21953 0.95492 1.02492 1.00975 1.21064 0.95913 0.98562 0.95208 0.91744 1.21560 1.00357 0.96044 0.97062 1.21606 1.00918 0.95243 0.98163 1.21498 1.00267 0.99839 0.93114 1.21146 1.01083 0.93385 0.94822 0.90655 1.22077 0.95900 0.85834 0.95101 1.85198 1.69379 1.23223 1.47070 1.20392 1.26455 0.95643 1.00670 0.90564 1.24320 0.98593 0.95265 0.97351 1.69696 1.46643 1.09874 1.30012 0.86156 0.80860 0.78410 0.81148 1.20816 1.21850 1.18901 1.21531 1.00460 0.95273 0.97179 0.92927 0.93289 0.91634 0.92626 0.92229 0.91899 0.92556 0.92448 0.91013 0.95514 0.95479 0.92229 0.92082 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.50 37.16 0.32 -1.43 16 2 C -0.09 -1.04 3.19 -90.62 -0.29 -1.33 16 3 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.11 -1.29 5.45 -26.73 -0.15 -1.44 16 5 C -0.12 -1.61 5.65 -26.73 -0.15 -1.76 16 6 C -0.11 -1.80 5.10 -26.73 -0.14 -1.93 16 7 C -0.09 -1.47 2.15 -90.62 -0.20 -1.67 16 8 H 0.08 1.34 6.43 -51.93 -0.33 1.00 16 9 C 0.09 1.90 5.39 37.16 0.20 2.10 16 10 O -0.33 -8.97 8.14 -16.51 -0.13 -9.11 16 11 C -0.35 -10.72 10.35 30.88 0.32 -10.40 16 12 H 0.08 2.41 8.00 -52.49 -0.42 1.99 16 13 C 0.04 1.26 5.49 -17.51 -0.10 1.16 16 14 N -0.92 -29.05 13.97 55.48 0.77 -28.28 16 15 Si 0.91 23.73 28.62 -169.99 -4.86 18.86 16 16 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 18 H -0.26 -6.87 7.11 56.52 0.40 -6.47 16 19 C -0.11 -1.47 4.73 -26.73 -0.13 -1.59 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.83 4.81 -51.93 -0.25 0.58 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.83 6.43 -51.93 -0.33 0.49 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.36 7.82 -51.93 -0.41 0.95 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.27 7.93 8.31 -40.82 -0.34 7.60 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 259.43 15.07 3.91 3.91 Total: -1.00 -31.76 259.43 -6.15 -37.91 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -5.53 Total: -5.01 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -0.30 Total: -18.28 kcal Atomic # 7 Polarization: -29.05 SS G_CDS: 0.77 Total: -28.28 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.13 Total: -9.11 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -4.86 Total: 18.86 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.76 -6.15 -37.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300745421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.865 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds