Wall clock time and date at job start Mon Mar 30 2020 02:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47306 * 2 1 4 4 C 1.53002 * 109.47309 * 239.99864 * 2 1 3 5 5 C 1.53004 * 109.46936 * 300.00482 * 4 2 1 6 6 C 1.53002 * 109.46991 * 299.99556 * 5 4 2 7 7 C 1.53004 * 109.46746 * 60.00096 * 6 5 4 8 8 H 1.08998 * 109.46791 * 60.00582 * 7 6 5 9 9 C 1.53002 * 109.46746 * 180.02562 * 7 6 5 10 10 O 1.42905 * 109.47079 * 294.99927 * 9 7 6 11 11 C 1.34930 * 116.99582 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00365 * 359.97438 * 11 10 9 13 13 C 1.38636 * 119.99370 * 180.02562 * 11 10 9 14 14 N 1.31589 * 119.99721 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00453 * 359.97438 * 13 11 10 16 16 H 1.48492 * 109.47238 * 89.99904 * 15 13 11 17 17 H 1.48500 * 109.47276 * 210.00398 * 15 13 11 18 18 H 1.48497 * 109.46816 * 329.99889 * 15 13 11 19 19 C 1.52994 * 109.47325 * 299.99726 * 7 6 5 20 20 H 1.08996 * 109.47287 * 300.00374 * 1 2 3 21 21 H 1.09001 * 109.46765 * 60.00149 * 1 2 3 22 22 H 1.08990 * 109.47275 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46743 * 60.00024 * 4 2 1 24 24 H 1.08994 * 109.47199 * 180.02562 * 4 2 1 25 25 H 1.08994 * 109.47423 * 59.99836 * 5 4 2 26 26 H 1.08996 * 109.47141 * 180.02562 * 5 4 2 27 27 H 1.08998 * 109.47000 * 300.00806 * 6 5 4 28 28 H 1.09000 * 109.47089 * 180.02562 * 6 5 4 29 29 H 1.09004 * 109.46930 * 175.00154 * 9 7 6 30 30 H 1.09000 * 109.47312 * 55.00097 * 9 7 6 31 31 H 0.96994 * 119.99898 * 180.02562 * 14 13 11 32 32 H 1.09004 * 109.47054 * 179.97438 * 19 7 6 33 33 H 1.08994 * 109.47401 * 300.00157 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5299 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2492 9 6 2.0405 -2.8846 2.4985 10 8 1.4711 -4.1939 2.5590 11 6 1.8215 -4.9663 3.6085 12 1 2.5040 -4.5866 4.3544 13 6 1.3061 -6.2476 3.7285 14 7 1.6474 -7.0008 4.7522 15 14 0.1261 -6.9047 2.4380 16 1 0.8950 -7.5824 1.3635 17 1 -0.8056 -7.8747 3.0673 18 1 -0.6491 -5.7790 1.8574 19 6 2.0400 -0.7213 1.2493 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.6767 -0.2074 -2.1392 24 1 3.1300 -0.7217 -1.2490 25 1 0.4400 -2.1638 -1.2493 26 1 1.8937 -2.6778 -2.1389 27 1 3.1299 -2.8850 0.0001 28 1 1.6769 -3.9128 -0.0002 29 1 1.7521 -2.3216 3.3862 30 1 3.1268 -2.9624 2.4547 31 1 1.2871 -7.8974 4.8361 32 1 1.6763 -0.2073 2.1390 33 1 3.1300 -0.7213 1.2493 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300745421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:02 Heat of formation + Delta-G solvation = -88.973112 kcal Electronic energy + Delta-G solvation = -13127.202520 eV Core-core repulsion = 10958.276299 eV Total energy + Delta-G solvation = -2168.926221 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.29302 -38.21196 -34.32280 -33.08870 -32.24628 -27.69291 -27.44219 -25.41171 -23.15147 -21.98434 -19.90256 -19.34169 -17.55788 -16.60366 -16.22043 -15.71947 -15.29550 -14.92344 -14.67008 -14.57299 -13.92410 -13.59459 -13.43611 -12.86993 -12.76194 -12.45829 -12.42734 -11.98645 -11.92046 -11.85805 -11.53144 -11.44455 -11.06944 -10.83361 -10.76623 -10.37389 -8.29945 -6.00079 1.35298 1.39265 1.58160 2.41890 3.02403 3.32926 3.79233 3.85067 3.98614 4.21436 4.37086 4.49347 4.52056 4.58318 4.61219 4.69190 4.77751 4.85263 4.89508 5.05729 5.09637 5.14621 5.18472 5.33284 5.37671 5.42720 5.48068 5.54153 5.59919 5.69827 6.12370 7.09179 7.80409 8.86268 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053097 B = 0.008943 C = 0.008396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.208998 B = 3130.336289 C = 3334.011026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.087 0.913 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.078 4.078 8 H 0.068 0.932 9 C 0.079 3.921 10 O -0.345 6.345 11 C -0.361 4.361 12 H 0.045 0.955 13 C -0.015 4.015 14 N -0.954 5.954 15 Si 0.976 3.024 16 H -0.271 1.271 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.103 4.103 20 H 0.053 0.947 21 H 0.066 0.934 22 H 0.048 0.952 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.275 0.725 32 H 0.064 0.936 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 14.081 -13.338 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.105 0.895 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.148 4.148 7 C -0.097 4.097 8 H 0.087 0.913 9 C 0.002 3.998 10 O -0.261 6.261 11 C -0.440 4.440 12 H 0.063 0.937 13 C -0.208 4.208 14 N -0.601 5.601 15 Si 0.800 3.200 16 H -0.197 1.197 17 H -0.203 1.203 18 H -0.187 1.187 19 C -0.140 4.140 20 H 0.072 0.928 21 H 0.085 0.915 22 H 0.067 0.933 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.583 13.898 -13.427 19.389 hybrid contribution -0.007 -0.662 0.486 0.822 sum -1.590 13.236 -12.940 18.579 Atomic orbital electron populations 1.21952 0.95342 1.01674 1.01993 1.21081 0.96006 0.99374 0.93911 0.89492 1.21561 1.00686 0.94625 0.97816 1.21571 1.00925 0.96365 0.96581 1.21482 1.00266 0.98466 0.94604 1.21135 1.00614 0.95138 0.92785 0.91345 1.22456 0.95916 0.83805 0.97601 1.85153 1.69994 1.25251 1.45726 1.20385 1.26067 0.96535 1.00976 0.93678 1.25235 1.00439 0.95465 0.99662 1.69803 1.47944 1.10545 1.31822 0.85104 0.78623 0.77863 0.78387 1.19682 1.20305 1.18741 1.21528 1.00745 0.92877 0.98898 0.92816 0.91464 0.93330 0.90385 0.91742 0.91886 0.91390 0.92402 0.94211 0.95705 0.95652 0.91638 0.91774 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.50 71.98 0.61 -2.45 16 2 C -0.09 -1.71 3.19 -10.79 -0.03 -1.75 16 3 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 4 C -0.11 -2.11 5.45 30.60 0.17 -1.95 16 5 C -0.12 -2.81 5.65 30.60 0.17 -2.64 16 6 C -0.11 -3.54 5.10 30.60 0.16 -3.39 16 7 C -0.08 -2.63 2.15 -10.79 -0.02 -2.65 16 8 H 0.07 2.40 6.43 -2.39 -0.02 2.38 16 9 C 0.08 3.45 5.39 71.98 0.39 3.83 16 10 O -0.34 -18.93 8.14 -81.99 -0.67 -19.60 16 11 C -0.36 -22.51 10.35 67.91 0.70 -21.81 16 12 H 0.05 3.00 8.00 -2.91 -0.02 2.98 16 13 C -0.02 -0.93 5.49 84.82 0.47 -0.47 16 14 N -0.95 -61.36 13.97 21.61 0.30 -61.06 16 15 Si 0.98 49.05 28.62 68.60 1.96 51.02 16 16 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 18 H -0.26 -13.03 7.11 99.48 0.71 -12.33 16 19 C -0.10 -2.63 4.73 30.59 0.14 -2.48 16 20 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 22 H 0.05 1.14 4.81 -2.39 -0.01 1.13 16 23 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 1.52 6.43 -2.39 -0.02 1.51 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.04 1.50 7.82 -2.39 -0.02 1.48 16 29 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.27 16.34 8.31 -92.71 -0.77 15.57 16 32 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -68.44 259.43 5.40 -63.04 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: 1.05 Total: 2.35 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 2.75 Total: -35.74 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.30 Total: -61.06 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.67 Total: -19.60 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 1.96 Total: 51.02 kcal Total: -68.44 5.40 -63.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300745421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.937 kcal (2) G-P(sol) polarization free energy of solvation -68.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds