Wall clock time and date at job start Mon Mar 30 2020 02:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.52994 * 109.47378 * 120.00027 * 2 1 3 5 5 C 1.53003 * 109.47083 * 59.99560 * 4 2 1 6 6 C 1.53001 * 109.47222 * 60.00338 * 5 4 2 7 7 C 1.52999 * 109.46993 * 300.00109 * 6 5 4 8 8 H 1.08996 * 109.47272 * 299.99764 * 7 6 5 9 9 C 1.52994 * 109.47429 * 179.97438 * 7 6 5 10 10 O 1.42899 * 109.47500 * 64.99498 * 9 7 6 11 11 C 1.34924 * 117.00684 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99450 * 0.02562 * 11 10 9 13 13 C 1.38628 * 120.00373 * 180.02562 * 11 10 9 14 14 N 1.31584 * 120.00139 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00247 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47228 * 180.02562 * 15 13 11 17 17 H 1.48501 * 109.46793 * 300.00083 * 15 13 11 18 18 H 1.48500 * 109.47000 * 60.00175 * 15 13 11 19 19 C 1.53003 * 109.47226 * 59.99893 * 7 6 5 20 20 H 1.08995 * 109.46525 * 300.00281 * 1 2 3 21 21 H 1.08998 * 109.47209 * 60.00027 * 1 2 3 22 22 H 1.09001 * 109.47076 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47212 * 299.99774 * 4 2 1 24 24 H 1.08996 * 109.47592 * 179.97438 * 4 2 1 25 25 H 1.09002 * 109.47278 * 300.00152 * 5 4 2 26 26 H 1.08998 * 109.47124 * 180.02562 * 5 4 2 27 27 H 1.09000 * 109.47340 * 180.02562 * 6 5 4 28 28 H 1.09002 * 109.47147 * 59.99733 * 6 5 4 29 29 H 1.09005 * 109.47216 * 305.00347 * 9 7 6 30 30 H 1.09002 * 109.47959 * 184.99933 * 9 7 6 31 31 H 0.97005 * 119.99693 * 0.02562 * 14 13 11 32 32 H 1.08996 * 109.47101 * 59.99766 * 19 7 6 33 33 H 1.08998 * 109.47124 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5300 -2.1637 1.2492 6 6 2.0399 -2.8851 0.0000 7 6 1.5299 -2.1638 -1.2492 8 1 0.4400 -2.1638 -1.2493 9 6 2.0403 -2.8847 -2.4985 10 8 1.4711 -4.1940 -2.5590 11 6 1.8213 -4.9664 -3.6083 12 1 2.5037 -4.5867 -4.3543 13 6 1.3052 -6.2474 -3.7289 14 7 0.4734 -6.7099 -2.8203 15 14 1.7907 -7.3171 -5.1814 16 1 1.1069 -8.6313 -5.0787 17 1 1.3891 -6.6481 -6.4449 18 1 3.2615 -7.5220 -5.1755 19 6 2.0400 -0.7213 -1.2493 20 1 -0.3632 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6768 -0.2074 2.1392 24 1 3.1300 -0.7216 1.2490 25 1 0.4400 -2.1637 1.2493 26 1 1.8930 -2.6774 2.1394 27 1 1.6762 -3.9126 -0.0002 28 1 3.1299 -2.8851 -0.0001 29 1 3.1267 -2.9626 -2.4546 30 1 1.7520 -2.3218 -3.3862 31 1 0.2210 -6.1543 -2.0663 32 1 3.1300 -0.7214 -1.2493 33 1 1.6763 -0.2074 -2.1390 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300745422.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:03 Heat of formation + Delta-G solvation = -76.638196 kcal Electronic energy + Delta-G solvation = -13096.614387 eV Core-core repulsion = 10928.223047 eV Total energy + Delta-G solvation = -2168.391339 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.03148 -36.14155 -32.39576 -31.33957 -30.73536 -26.60392 -25.21822 -23.49716 -21.99543 -20.56283 -18.44316 -17.72859 -15.48862 -14.97657 -14.49647 -14.13090 -13.72921 -13.63219 -13.51895 -13.17953 -12.39333 -12.20739 -11.64285 -11.30344 -11.21168 -10.88787 -10.80116 -10.66995 -10.13401 -10.07903 -9.96347 -9.77555 -9.56582 -9.37700 -9.04547 -7.88488 -6.23110 -3.53341 3.43237 3.48324 3.65995 4.48105 4.86440 4.90185 4.96532 5.37436 5.39731 5.51155 5.55025 5.56840 5.72973 5.80136 5.85806 5.93731 6.02702 6.05510 6.16747 6.22568 6.26291 6.38886 6.43542 6.50870 6.56139 6.66839 6.73004 6.95942 6.97884 7.76197 8.91188 9.52009 10.18044 11.25166 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068198 B = 0.007641 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.468433 B = 3663.710129 C = 3784.600233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 H 0.064 0.936 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.107 4.107 7 C -0.083 4.083 8 H 0.074 0.926 9 C 0.086 3.914 10 O -0.318 6.318 11 C -0.446 4.446 12 H 0.050 0.950 13 C -0.009 4.009 14 N -0.915 5.915 15 Si 1.090 2.910 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.289 1.289 19 C -0.107 4.107 20 H 0.048 0.952 21 H 0.051 0.949 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.275 0.725 32 H 0.059 0.941 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.465 11.908 5.889 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 H 0.082 0.918 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.145 4.145 7 C -0.102 4.102 8 H 0.092 0.908 9 C 0.009 3.991 10 O -0.234 6.234 11 C -0.525 4.525 12 H 0.068 0.932 13 C -0.209 4.209 14 N -0.555 5.555 15 Si 0.917 3.083 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.216 1.216 19 C -0.144 4.144 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.084 0.916 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.122 10.357 5.329 11.839 hybrid contribution 0.527 1.774 0.432 1.900 sum 2.649 12.130 5.762 13.688 Atomic orbital electron populations 1.21952 0.95459 1.02553 1.00930 1.21058 0.95946 0.98483 0.95212 0.91807 1.21560 1.00291 0.96133 0.97029 1.21600 1.00951 0.95126 0.98172 1.21464 0.99973 1.00010 0.93020 1.21106 1.00985 0.93186 0.94881 0.90766 1.22054 0.95518 0.86743 0.94825 1.85303 1.68969 1.22327 1.46843 1.21679 1.30005 0.98388 1.02477 0.93232 1.26028 0.96621 0.94390 1.03857 1.70570 1.32577 1.39710 1.12633 0.83181 0.75628 0.76015 0.73453 1.20324 1.21635 1.21627 1.21536 1.00322 0.95443 0.97121 0.93257 0.92990 0.91578 0.92610 0.92311 0.91867 0.92567 0.90841 0.92772 0.96215 0.96263 0.91562 0.92231 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.50 37.16 0.32 -1.55 16 2 C -0.09 -1.11 3.19 -90.62 -0.29 -1.40 16 3 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.11 -1.39 5.45 -26.73 -0.15 -1.53 16 5 C -0.12 -1.73 5.65 -26.73 -0.15 -1.88 16 6 C -0.11 -1.91 5.10 -26.73 -0.14 -2.05 16 7 C -0.08 -1.54 2.15 -90.62 -0.20 -1.73 16 8 H 0.07 1.44 6.43 -51.93 -0.33 1.10 16 9 C 0.09 1.99 5.39 37.15 0.20 2.19 16 10 O -0.32 -9.33 8.72 -16.49 -0.14 -9.47 16 11 C -0.45 -13.74 9.89 30.88 0.31 -13.43 16 12 H 0.05 1.47 7.77 -52.49 -0.41 1.06 16 13 C -0.01 -0.28 5.49 -17.51 -0.10 -0.38 16 14 N -0.92 -29.80 13.70 55.48 0.76 -29.04 16 15 Si 1.09 26.23 29.92 -169.99 -5.09 21.14 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.11 -1.57 4.73 -26.73 -0.13 -1.70 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.07 0.91 4.81 -51.93 -0.25 0.66 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.90 6.43 -51.93 -0.33 0.57 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.54 7.82 -51.93 -0.41 1.13 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.27 9.13 7.97 -40.82 -0.33 8.80 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 260.00 15.07 3.92 3.92 Total: -1.00 -32.98 260.00 -6.37 -39.35 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.50 Total: -2.45 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -0.32 Total: -23.46 kcal Atomic # 7 Polarization: -29.80 SS G_CDS: 0.76 Total: -29.04 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.14 Total: -9.47 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.09 Total: 21.14 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.98 -6.37 -39.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300745422.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.284 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds