Wall clock time and date at job start Mon Mar 30 2020 02:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.52994 * 109.47378 * 120.00027 * 2 1 3 5 5 C 1.53003 * 109.47083 * 59.99560 * 4 2 1 6 6 C 1.53001 * 109.47222 * 60.00338 * 5 4 2 7 7 C 1.52999 * 109.46993 * 300.00109 * 6 5 4 8 8 H 1.08996 * 109.47272 * 299.99764 * 7 6 5 9 9 C 1.52994 * 109.47429 * 179.97438 * 7 6 5 10 10 O 1.42899 * 109.47500 * 64.99498 * 9 7 6 11 11 C 1.34924 * 117.00684 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99450 * 0.02562 * 11 10 9 13 13 C 1.38628 * 120.00373 * 180.02562 * 11 10 9 14 14 N 1.31584 * 120.00139 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00247 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47228 * 180.02562 * 15 13 11 17 17 H 1.48501 * 109.46793 * 300.00083 * 15 13 11 18 18 H 1.48500 * 109.47000 * 60.00175 * 15 13 11 19 19 C 1.53003 * 109.47226 * 59.99893 * 7 6 5 20 20 H 1.08995 * 109.46525 * 300.00281 * 1 2 3 21 21 H 1.08998 * 109.47209 * 60.00027 * 1 2 3 22 22 H 1.09001 * 109.47076 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47212 * 299.99774 * 4 2 1 24 24 H 1.08996 * 109.47592 * 179.97438 * 4 2 1 25 25 H 1.09002 * 109.47278 * 300.00152 * 5 4 2 26 26 H 1.08998 * 109.47124 * 180.02562 * 5 4 2 27 27 H 1.09000 * 109.47340 * 180.02562 * 6 5 4 28 28 H 1.09002 * 109.47147 * 59.99733 * 6 5 4 29 29 H 1.09005 * 109.47216 * 305.00347 * 9 7 6 30 30 H 1.09002 * 109.47959 * 184.99933 * 9 7 6 31 31 H 0.97005 * 119.99693 * 0.02562 * 14 13 11 32 32 H 1.08996 * 109.47101 * 59.99766 * 19 7 6 33 33 H 1.08998 * 109.47124 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5300 -2.1637 1.2492 6 6 2.0399 -2.8851 0.0000 7 6 1.5299 -2.1638 -1.2492 8 1 0.4400 -2.1638 -1.2493 9 6 2.0403 -2.8847 -2.4985 10 8 1.4711 -4.1940 -2.5590 11 6 1.8213 -4.9664 -3.6083 12 1 2.5037 -4.5867 -4.3543 13 6 1.3052 -6.2474 -3.7289 14 7 0.4734 -6.7099 -2.8203 15 14 1.7907 -7.3171 -5.1814 16 1 1.1069 -8.6313 -5.0787 17 1 1.3891 -6.6481 -6.4449 18 1 3.2615 -7.5220 -5.1755 19 6 2.0400 -0.7213 -1.2493 20 1 -0.3632 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6768 -0.2074 2.1392 24 1 3.1300 -0.7216 1.2490 25 1 0.4400 -2.1637 1.2493 26 1 1.8930 -2.6774 2.1394 27 1 1.6762 -3.9126 -0.0002 28 1 3.1299 -2.8851 -0.0001 29 1 3.1267 -2.9626 -2.4546 30 1 1.7520 -2.3218 -3.3862 31 1 0.2210 -6.1543 -2.0663 32 1 3.1300 -0.7214 -1.2493 33 1 1.6763 -0.2074 -2.1390 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300745422.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:03 Heat of formation + Delta-G solvation = -97.165883 kcal Electronic energy + Delta-G solvation = -13097.504534 eV Core-core repulsion = 10928.223047 eV Total energy + Delta-G solvation = -2169.281487 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.34479 -38.21156 -34.29654 -32.90631 -32.24649 -27.67083 -27.05031 -25.66551 -23.21955 -22.04151 -20.19671 -19.42844 -17.02268 -16.82392 -16.28711 -15.62845 -15.45730 -15.33115 -14.86267 -14.63748 -13.66746 -13.57604 -12.97456 -12.69019 -12.66604 -12.51581 -12.12201 -11.98114 -11.92153 -11.90940 -11.50197 -11.46033 -11.11025 -10.87657 -10.82133 -10.20260 -8.70105 -5.99095 1.49974 1.62495 1.80867 2.49909 3.14839 3.44668 3.71925 3.79022 3.98438 4.14846 4.31304 4.39867 4.44993 4.52608 4.56844 4.62090 4.71119 4.77065 4.83352 5.00170 5.02522 5.07973 5.11714 5.26652 5.29815 5.34199 5.37754 5.44004 5.52237 5.62888 6.42367 7.15606 7.89124 8.79046 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068198 B = 0.007641 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.468433 B = 3663.710129 C = 3784.600233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 H 0.091 0.909 4 C -0.108 4.108 5 C -0.116 4.116 6 C -0.105 4.105 7 C -0.076 4.076 8 H 0.060 0.940 9 C 0.079 3.921 10 O -0.353 6.353 11 C -0.464 4.464 12 H 0.056 0.944 13 C -0.066 4.066 14 N -0.939 5.939 15 Si 1.143 2.857 16 H -0.276 1.276 17 H -0.266 1.266 18 H -0.266 1.266 19 C -0.101 4.101 20 H 0.069 0.931 21 H 0.053 0.947 22 H 0.043 0.957 23 H 0.081 0.919 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.027 0.973 28 H 0.055 0.945 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.254 0.746 32 H 0.066 0.934 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.332 13.406 5.877 15.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 H 0.110 0.890 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.143 4.143 7 C -0.095 4.095 8 H 0.078 0.922 9 C 0.002 3.998 10 O -0.269 6.269 11 C -0.543 4.543 12 H 0.074 0.926 13 C -0.258 4.258 14 N -0.580 5.580 15 Si 0.960 3.040 16 H -0.201 1.201 17 H -0.191 1.191 18 H -0.191 1.191 19 C -0.138 4.138 20 H 0.088 0.912 21 H 0.072 0.928 22 H 0.062 0.938 23 H 0.099 0.901 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.999 11.901 5.333 13.381 hybrid contribution 0.267 1.371 0.458 1.470 sum 3.266 13.272 5.791 14.844 Atomic orbital electron populations 1.21951 0.95466 1.01432 1.02107 1.21087 0.95913 0.99512 0.93785 0.89030 1.21560 1.00760 0.94265 0.97973 1.21561 1.00781 0.96635 0.96354 1.21405 0.99942 0.97983 0.94920 1.21095 1.00100 0.95376 0.92887 0.92192 1.22412 0.95525 0.84588 0.97299 1.85278 1.70048 1.24833 1.46782 1.22148 1.30014 0.99175 1.02944 0.92631 1.28056 0.95603 0.96167 1.05968 1.70726 1.34580 1.39555 1.13119 0.82590 0.76692 0.74172 0.70504 1.20104 1.19079 1.19092 1.21526 1.00734 0.92573 0.99014 0.91217 0.92761 0.93828 0.90086 0.91557 0.92173 0.91451 0.95367 0.92586 0.96144 0.96195 0.93794 0.91479 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.50 71.98 0.61 -2.80 16 2 C -0.08 -1.86 3.19 -10.79 -0.03 -1.89 16 3 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.11 -2.31 5.45 30.59 0.17 -2.15 16 5 C -0.12 -3.18 5.65 30.60 0.17 -3.01 16 6 C -0.10 -3.82 5.10 30.59 0.16 -3.67 16 7 C -0.08 -2.85 2.15 -10.79 -0.02 -2.88 16 8 H 0.06 2.41 6.43 -2.39 -0.02 2.39 16 9 C 0.08 3.72 5.39 71.98 0.39 4.11 16 10 O -0.35 -21.49 8.72 -81.93 -0.71 -22.20 16 11 C -0.46 -29.16 9.89 67.91 0.67 -28.49 16 12 H 0.06 3.32 7.77 -2.91 -0.02 3.30 16 13 C -0.07 -4.07 5.49 84.82 0.47 -3.61 16 14 N -0.94 -62.82 13.70 21.61 0.30 -62.53 16 15 Si 1.14 52.18 29.92 68.60 2.05 54.23 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 C -0.10 -2.80 4.73 30.60 0.14 -2.66 16 20 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.04 1.17 4.81 -2.39 -0.01 1.15 16 23 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.69 6.43 -2.39 -0.02 1.67 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.03 1.25 7.82 -2.39 -0.02 1.23 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.25 17.68 7.97 -92.70 -0.74 16.94 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -73.08 260.00 5.44 -67.64 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 1.08 Total: 9.89 kcal Atomic # 6 Polarization: -49.75 SS G_CDS: 2.72 Total: -47.03 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: 0.30 Total: -62.53 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.71 Total: -22.20 kcal Atomic # 14 Polarization: 52.18 SS G_CDS: 2.05 Total: 54.23 kcal Total: -73.08 5.44 -67.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300745422.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.525 kcal (2) G-P(sol) polarization free energy of solvation -73.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds