Wall clock time and date at job start Mon Mar 30 2020 02:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.53006 * 109.47223 * 119.99147 * 2 1 3 5 5 C 1.52997 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46978 * 299.99874 * 5 4 2 7 7 C 1.52996 * 109.46891 * 60.00410 * 6 5 4 8 8 H 1.09001 * 109.47372 * 59.99964 * 7 6 5 9 9 C 1.53001 * 109.47302 * 179.97438 * 7 6 5 10 10 O 1.42899 * 109.47310 * 295.00121 * 9 7 6 11 11 C 1.34925 * 117.00155 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00218 * 359.97438 * 11 10 9 13 13 C 1.38639 * 119.99974 * 179.97438 * 11 10 9 14 14 N 1.31584 * 119.99881 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00069 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47230 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47142 * 120.00079 * 15 13 11 18 18 H 1.48500 * 109.47355 * 240.00029 * 15 13 11 19 19 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 20 20 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 22 22 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 23 23 H 1.09001 * 109.47002 * 60.00080 * 4 2 1 24 24 H 1.09000 * 109.47050 * 300.00346 * 4 2 1 25 25 H 1.09002 * 109.47045 * 180.02562 * 5 4 2 26 26 H 1.09001 * 109.47375 * 59.99966 * 5 4 2 27 27 H 1.08992 * 109.47056 * 300.00064 * 6 5 4 28 28 H 1.09004 * 109.47006 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.46989 * 54.99886 * 9 7 6 30 30 H 1.08994 * 109.47704 * 174.99699 * 9 7 6 31 31 H 0.96997 * 119.99802 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.47153 * 59.99783 * 19 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7205 1.2497 6 6 4.0804 -1.4416 0.0006 7 6 3.5705 -0.7205 -1.2487 8 1 3.9335 0.3073 -1.2487 9 6 4.0814 -1.4412 -2.4979 10 8 5.5055 -1.3394 -2.5576 11 6 6.1183 -1.9271 -3.6062 12 1 5.5339 -2.4450 -4.3523 13 6 7.4981 -1.8662 -3.7260 14 7 8.2102 -1.2356 -2.8167 15 14 8.3465 -2.6804 -5.1774 16 1 7.3294 -3.3191 -6.0508 17 1 9.0918 -1.6567 -5.9532 18 1 9.2929 -3.7123 -4.6825 19 6 2.0400 -0.7213 -1.2491 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 1.6766 -1.7488 1.2495 24 1 1.6766 -0.2072 2.1393 25 1 3.9333 -1.2346 2.1395 26 1 3.9329 0.3073 1.2498 27 1 3.7175 -2.4693 0.0005 28 1 5.1705 -1.4416 0.0010 29 1 3.7937 -2.4916 -2.4546 30 1 3.6469 -0.9819 -3.3857 31 1 9.1757 -1.1933 -2.9004 32 1 1.6767 -0.2076 -2.1392 33 1 1.6767 -1.7490 -1.2490 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300745423.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:05 Heat of formation + Delta-G solvation = -74.564012 kcal Electronic energy + Delta-G solvation = -12903.232565 eV Core-core repulsion = 10734.931169 eV Total energy + Delta-G solvation = -2168.301396 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.66294 -35.97901 -32.62086 -31.61801 -30.76295 -26.16984 -25.40675 -23.71501 -21.63906 -20.02795 -19.37726 -17.38571 -15.27048 -14.90577 -14.43116 -14.18420 -13.88167 -13.63203 -13.28255 -12.68983 -12.24804 -12.13609 -11.57762 -11.51291 -11.10898 -11.03566 -10.89964 -10.67788 -10.56229 -10.22871 -10.02112 -9.74802 -9.53847 -9.33338 -9.01140 -7.89585 -5.89827 -3.52537 3.33582 3.36806 3.41320 4.35047 4.88482 4.92650 5.05079 5.39046 5.44115 5.47413 5.61966 5.72026 5.76285 5.83233 5.85338 5.94396 6.03913 6.12393 6.20701 6.24865 6.36817 6.47769 6.51545 6.57051 6.63184 6.77697 6.82106 7.06418 7.09916 7.53634 8.48851 9.54027 10.25496 11.31688 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.072229 B = 0.007238 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.564761 B = 3867.692224 C = 4122.518254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.108 4.108 7 C -0.081 4.081 8 H 0.071 0.929 9 C 0.078 3.922 10 O -0.295 6.295 11 C -0.357 4.357 12 H 0.061 0.939 13 C 0.021 3.979 14 N -0.890 5.890 15 Si 0.923 3.077 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.105 4.105 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.256 0.744 32 H 0.058 0.942 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.434 1.073 5.832 13.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.145 4.145 7 C -0.099 4.099 8 H 0.090 0.910 9 C 0.000 4.000 10 O -0.210 6.210 11 C -0.436 4.436 12 H 0.078 0.922 13 C -0.177 4.177 14 N -0.533 5.533 15 Si 0.751 3.249 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.143 4.143 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.174 1.202 6.006 13.628 hybrid contribution 0.302 -0.546 -0.967 1.150 sum -11.872 0.656 5.039 12.914 Atomic orbital electron populations 1.21829 0.95774 1.01498 1.01196 1.21119 0.94755 0.99782 0.95345 0.91338 1.21590 0.96196 1.00227 0.96904 1.21563 0.94881 1.00927 0.98337 1.21472 1.02093 0.98113 0.92851 1.21054 0.93429 1.00445 0.95008 0.91038 1.22131 0.86324 0.96732 0.94795 1.85617 1.13583 1.75737 1.46032 1.20862 0.90170 1.31475 1.01132 0.92155 1.24939 0.95507 0.98838 0.98388 1.70035 1.05472 1.43619 1.34219 0.85919 0.79456 0.78653 0.80896 1.19994 1.20932 1.20922 1.21572 0.95509 1.00269 0.96947 0.92904 0.93084 0.92893 0.92313 0.92733 0.92530 0.92199 0.92864 0.90373 0.96252 0.96309 0.93375 0.92317 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.19 37.15 0.34 -1.19 16 2 C -0.09 -1.16 2.72 -90.62 -0.25 -1.41 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.11 -1.40 5.20 -26.73 -0.14 -1.54 16 5 C -0.12 -1.75 5.92 -26.73 -0.16 -1.91 16 6 C -0.11 -1.96 5.10 -26.73 -0.14 -2.09 16 7 C -0.08 -1.52 2.43 -90.60 -0.22 -1.74 16 8 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 9 C 0.08 1.79 5.40 37.16 0.20 1.99 16 10 O -0.29 -8.67 9.31 -16.49 -0.15 -8.82 16 11 C -0.36 -10.82 9.89 30.88 0.31 -10.51 16 12 H 0.06 1.73 7.77 -52.49 -0.41 1.32 16 13 C 0.02 0.63 5.49 -17.51 -0.10 0.54 16 14 N -0.89 -28.46 13.68 55.48 0.76 -27.70 16 15 Si 0.92 22.54 29.55 -169.99 -5.02 17.52 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.11 -1.56 4.49 -26.71 -0.12 -1.68 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.69 7.82 -51.93 -0.41 1.28 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 267.59 15.07 4.03 4.03 Total: -1.00 -32.52 267.59 -6.52 -39.04 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -5.87 Total: -4.53 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -0.27 Total: -19.55 kcal Atomic # 7 Polarization: -28.46 SS G_CDS: 0.76 Total: -27.70 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.15 Total: -8.82 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.52 -6.52 -39.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300745423.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.519 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds