Wall clock time and date at job start Mon Mar 30 2020 02:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.53006 * 109.47223 * 119.99147 * 2 1 3 5 5 C 1.52997 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46978 * 299.99874 * 5 4 2 7 7 C 1.52996 * 109.46891 * 60.00410 * 6 5 4 8 8 H 1.09001 * 109.47372 * 59.99964 * 7 6 5 9 9 C 1.53001 * 109.47302 * 179.97438 * 7 6 5 10 10 O 1.42899 * 109.47310 * 295.00121 * 9 7 6 11 11 C 1.34925 * 117.00155 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00218 * 359.97438 * 11 10 9 13 13 C 1.38639 * 119.99974 * 179.97438 * 11 10 9 14 14 N 1.31584 * 119.99881 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00069 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47230 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47142 * 120.00079 * 15 13 11 18 18 H 1.48500 * 109.47355 * 240.00029 * 15 13 11 19 19 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 20 20 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 22 22 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 23 23 H 1.09001 * 109.47002 * 60.00080 * 4 2 1 24 24 H 1.09000 * 109.47050 * 300.00346 * 4 2 1 25 25 H 1.09002 * 109.47045 * 180.02562 * 5 4 2 26 26 H 1.09001 * 109.47375 * 59.99966 * 5 4 2 27 27 H 1.08992 * 109.47056 * 300.00064 * 6 5 4 28 28 H 1.09004 * 109.47006 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.46989 * 54.99886 * 9 7 6 30 30 H 1.08994 * 109.47704 * 174.99699 * 9 7 6 31 31 H 0.96997 * 119.99802 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.47153 * 59.99783 * 19 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7205 1.2497 6 6 4.0804 -1.4416 0.0006 7 6 3.5705 -0.7205 -1.2487 8 1 3.9335 0.3073 -1.2487 9 6 4.0814 -1.4412 -2.4979 10 8 5.5055 -1.3394 -2.5576 11 6 6.1183 -1.9271 -3.6062 12 1 5.5339 -2.4450 -4.3523 13 6 7.4981 -1.8662 -3.7260 14 7 8.2102 -1.2356 -2.8167 15 14 8.3465 -2.6804 -5.1774 16 1 7.3294 -3.3191 -6.0508 17 1 9.0918 -1.6567 -5.9532 18 1 9.2929 -3.7123 -4.6825 19 6 2.0400 -0.7213 -1.2491 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 1.6766 -1.7488 1.2495 24 1 1.6766 -0.2072 2.1393 25 1 3.9333 -1.2346 2.1395 26 1 3.9329 0.3073 1.2498 27 1 3.7175 -2.4693 0.0005 28 1 5.1705 -1.4416 0.0010 29 1 3.7937 -2.4916 -2.4546 30 1 3.6469 -0.9819 -3.3857 31 1 9.1757 -1.1933 -2.9004 32 1 1.6767 -0.2076 -2.1392 33 1 1.6767 -1.7490 -1.2490 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300745423.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:05 Heat of formation + Delta-G solvation = -94.547242 kcal Electronic energy + Delta-G solvation = -12904.099103 eV Core-core repulsion = 10734.931169 eV Total energy + Delta-G solvation = -2169.167934 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.00885 -37.97607 -34.29576 -33.33057 -32.27293 -27.48165 -27.07628 -25.71018 -22.88845 -21.37820 -20.68039 -19.59889 -17.37564 -16.27814 -15.97723 -15.88931 -15.28239 -15.05760 -14.81805 -14.07640 -13.92122 -13.46394 -13.18111 -12.88285 -12.72348 -12.55673 -12.28030 -12.06316 -12.00548 -11.78567 -11.44380 -11.37614 -11.19849 -10.92509 -10.76577 -10.15557 -8.19445 -5.89281 1.37906 1.44124 1.54956 2.32045 3.13152 3.54778 3.77659 3.88196 4.12487 4.18660 4.35992 4.45308 4.55038 4.59669 4.69290 4.73355 4.80243 4.83525 4.92691 5.02172 5.06732 5.10810 5.21816 5.22564 5.31975 5.38776 5.43318 5.49960 5.58091 5.65464 6.19887 7.23297 8.06021 9.05963 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.072229 B = 0.007238 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.564761 B = 3867.692224 C = 4122.518254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.064 0.936 4 C -0.106 4.106 5 C -0.115 4.115 6 C -0.105 4.105 7 C -0.076 4.076 8 H 0.053 0.947 9 C 0.071 3.929 10 O -0.334 6.334 11 C -0.381 4.381 12 H 0.069 0.931 13 C -0.043 4.043 14 N -0.940 5.940 15 Si 1.007 2.993 16 H -0.258 1.258 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.098 4.098 20 H 0.058 0.942 21 H 0.066 0.934 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.023 0.977 30 H 0.022 0.978 31 H 0.261 0.739 32 H 0.064 0.936 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.946 0.607 5.680 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.083 0.917 4 C -0.144 4.144 5 C -0.152 4.152 6 C -0.143 4.143 7 C -0.095 4.095 8 H 0.071 0.929 9 C -0.006 4.006 10 O -0.250 6.250 11 C -0.460 4.460 12 H 0.087 0.913 13 C -0.236 4.236 14 N -0.585 5.585 15 Si 0.829 3.171 16 H -0.182 1.182 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.135 4.135 20 H 0.077 0.923 21 H 0.085 0.915 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.720 0.738 5.859 14.937 hybrid contribution 0.741 -0.388 -0.895 1.225 sum -12.980 0.350 4.964 13.901 Atomic orbital electron populations 1.21776 0.93492 1.02247 1.02242 1.21120 0.96563 0.99150 0.94037 0.91713 1.21577 0.93899 1.01070 0.97834 1.21527 0.96939 1.00126 0.96633 1.21400 0.99126 0.99005 0.94732 1.21063 0.96429 0.98662 0.93319 0.92876 1.22456 0.83488 0.97576 0.97076 1.85571 1.17002 1.76118 1.46312 1.21393 0.91087 1.31847 1.01659 0.91290 1.26266 0.96074 0.99327 1.01941 1.70211 1.06049 1.45322 1.36885 0.84674 0.78167 0.77653 0.76574 1.18163 1.19942 1.19940 1.21536 0.91881 1.01328 0.98762 0.92297 0.91504 0.92489 0.91564 0.90291 0.91303 0.92699 0.92432 0.95140 0.95897 0.95990 0.93035 0.91758 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.19 71.98 0.66 -1.80 16 2 C -0.09 -2.07 2.72 -10.79 -0.03 -2.10 16 3 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.11 -2.37 5.20 30.60 0.16 -2.21 16 5 C -0.11 -3.26 5.92 30.59 0.18 -3.08 16 6 C -0.10 -3.92 5.10 30.59 0.16 -3.76 16 7 C -0.08 -2.92 2.43 -10.78 -0.03 -2.94 16 8 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 9 C 0.07 3.35 5.40 71.98 0.39 3.74 16 10 O -0.33 -20.48 9.31 -81.94 -0.76 -21.24 16 11 C -0.38 -23.61 9.89 67.92 0.67 -22.94 16 12 H 0.07 4.00 7.77 -2.91 -0.02 3.98 16 13 C -0.04 -2.64 5.49 84.83 0.47 -2.17 16 14 N -0.94 -61.71 13.68 21.61 0.30 -61.41 16 15 Si 1.01 46.39 29.55 68.60 2.03 48.42 16 16 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 19 C -0.10 -2.76 4.49 30.61 0.14 -2.63 16 20 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 21 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.03 1.39 7.82 -2.38 -0.02 1.37 16 29 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -71.98 267.59 5.36 -66.61 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.04 Total: 7.52 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 2.77 Total: -39.89 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: 0.30 Total: -61.41 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.76 Total: -21.24 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -71.98 5.36 -66.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300745423.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.934 kcal (2) G-P(sol) polarization free energy of solvation -71.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds