Wall clock time and date at job start Mon Mar 30 2020 02:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47486 * 2 1 4 4 C 1.52997 * 109.47269 * 239.99665 * 2 1 3 5 5 C 1.53002 * 109.47415 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.46972 * 59.99860 * 5 4 2 7 7 C 1.52997 * 109.47165 * 300.00293 * 6 5 4 8 8 H 1.09000 * 109.47140 * 299.99954 * 7 6 5 9 9 C 1.53006 * 109.46974 * 180.02562 * 7 6 5 10 10 O 1.42893 * 109.47489 * 64.99827 * 9 7 6 11 11 C 1.34919 * 117.00194 * 180.02562 * 10 9 7 12 12 H 1.07997 * 120.00044 * 359.97438 * 11 10 9 13 13 C 1.38637 * 119.99957 * 180.02562 * 11 10 9 14 14 N 1.31581 * 120.00140 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99988 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47210 * 59.99702 * 15 13 11 17 17 H 1.48504 * 109.46979 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46871 * 299.99266 * 15 13 11 19 19 C 1.52999 * 109.47592 * 60.00300 * 7 6 5 20 20 H 1.09001 * 109.47362 * 300.00723 * 1 2 3 21 21 H 1.09002 * 109.46716 * 60.00082 * 1 2 3 22 22 H 1.09000 * 109.47486 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47140 * 300.00547 * 4 2 1 24 24 H 1.09001 * 109.47230 * 59.99691 * 4 2 1 25 25 H 1.08992 * 109.46974 * 180.02562 * 5 4 2 26 26 H 1.08996 * 109.46550 * 300.00288 * 5 4 2 27 27 H 1.09000 * 109.47054 * 60.00300 * 6 5 4 28 28 H 1.09001 * 109.46997 * 180.02562 * 6 5 4 29 29 H 1.09006 * 109.47001 * 185.00183 * 9 7 6 30 30 H 1.08998 * 109.47136 * 304.99640 * 9 7 6 31 31 H 0.97005 * 120.00140 * 180.02562 * 14 13 11 32 32 H 1.08993 * 109.47839 * 180.02562 * 19 7 6 33 33 H 1.09000 * 109.47160 * 59.99666 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7221 1.2496 8 1 3.9331 0.3054 1.2497 9 6 4.0795 -1.4433 2.4989 10 8 5.5036 -1.3425 2.5591 11 6 6.1155 -1.9308 3.6079 12 1 5.5303 -2.4477 4.3540 13 6 7.4953 -1.8708 3.7282 14 7 8.2082 -1.2406 2.8194 15 14 8.3426 -2.6859 5.1799 16 1 8.0460 -4.1410 5.1730 17 1 9.8096 -2.4797 5.0764 18 1 7.8459 -2.0853 6.4440 19 6 2.0395 -0.7216 1.2494 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.6766 -1.7489 -1.2492 24 1 1.6767 -0.2076 -2.1392 25 1 3.9333 -1.2353 -2.1390 26 1 3.9336 0.3056 -1.2487 27 1 3.7158 -2.4709 0.0002 28 1 5.1695 -1.4434 0.0008 29 1 3.6448 -0.9838 3.3866 30 1 3.7911 -2.4935 2.4553 31 1 9.1737 -1.1989 2.9034 32 1 1.6761 -0.2073 2.1390 33 1 1.6758 -1.7491 1.2492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300745424.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:06 Heat of formation + Delta-G solvation = -74.395713 kcal Electronic energy + Delta-G solvation = -12903.324525 eV Core-core repulsion = 10735.030427 eV Total energy + Delta-G solvation = -2168.294098 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.66388 -35.97614 -32.61943 -31.61638 -30.76283 -26.16833 -25.40354 -23.70923 -21.63923 -20.02744 -19.37555 -17.38166 -15.26168 -14.90389 -14.43091 -14.18356 -13.89057 -13.63428 -13.27867 -12.68783 -12.24457 -12.13431 -11.56937 -11.50887 -11.10226 -11.04159 -10.87937 -10.67510 -10.56081 -10.27165 -10.01744 -9.74566 -9.53569 -9.32513 -9.01464 -7.89313 -5.89210 -3.52085 3.35001 3.36564 3.39880 4.35398 4.88562 4.92736 5.05187 5.39247 5.44211 5.47560 5.62086 5.72108 5.76368 5.83337 5.85508 5.94528 6.04008 6.12461 6.20853 6.24972 6.36955 6.47920 6.51616 6.57206 6.63287 6.77887 6.82184 7.06538 7.10122 7.53052 8.49321 9.54417 10.25850 11.32135 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.072227 B = 0.007238 C = 0.006791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.571160 B = 3867.501011 C = 4122.346442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.108 4.108 7 C -0.081 4.081 8 H 0.071 0.929 9 C 0.078 3.922 10 O -0.294 6.294 11 C -0.359 4.359 12 H 0.060 0.940 13 C 0.022 3.978 14 N -0.890 5.890 15 Si 0.924 3.076 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.279 1.279 19 C -0.105 4.105 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.258 0.742 32 H 0.058 0.942 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.380 1.091 -5.841 13.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.145 4.145 7 C -0.099 4.099 8 H 0.090 0.910 9 C 0.000 4.000 10 O -0.209 6.209 11 C -0.438 4.438 12 H 0.077 0.923 13 C -0.176 4.176 14 N -0.534 5.534 15 Si 0.751 3.249 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.205 1.205 19 C -0.143 4.143 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.108 1.225 -6.020 13.577 hybrid contribution 0.284 -0.555 0.979 1.161 sum -11.824 0.670 -5.041 12.871 Atomic orbital electron populations 1.21832 0.95776 1.01497 1.01195 1.21120 0.94756 0.99778 0.95345 0.91336 1.21590 0.96198 1.00226 0.96906 1.21560 0.94882 1.00930 0.98335 1.21472 1.02098 0.98110 0.92844 1.21046 0.93438 1.00443 0.95012 0.91042 1.22131 0.86337 0.96725 0.94789 1.85614 1.13576 1.75729 1.46003 1.20767 0.90165 1.31687 1.01182 0.92267 1.24932 0.95491 0.98806 0.98370 1.70012 1.05566 1.43509 1.34276 0.86068 0.78538 0.79146 0.81138 1.20453 1.20893 1.20450 1.21564 0.95518 1.00266 0.96948 0.92891 0.93088 0.92902 0.92319 0.92730 0.92530 0.92207 0.92860 0.90369 0.96319 0.96258 0.93267 0.92317 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.19 37.16 0.34 -1.19 16 2 C -0.09 -1.16 2.72 -90.62 -0.25 -1.41 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.11 -1.40 5.20 -26.73 -0.14 -1.54 16 5 C -0.12 -1.75 5.92 -26.73 -0.16 -1.91 16 6 C -0.11 -1.96 5.10 -26.73 -0.14 -2.09 16 7 C -0.08 -1.52 2.43 -90.62 -0.22 -1.74 16 8 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 9 C 0.08 1.79 5.40 37.16 0.20 1.99 16 10 O -0.29 -8.66 9.31 -16.48 -0.15 -8.81 16 11 C -0.36 -10.87 9.89 30.88 0.31 -10.57 16 12 H 0.06 1.69 7.77 -52.49 -0.41 1.29 16 13 C 0.02 0.66 5.49 -17.51 -0.10 0.56 16 14 N -0.89 -28.46 13.67 55.48 0.76 -27.70 16 15 Si 0.92 22.54 29.55 -169.99 -5.02 17.52 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.11 -1.57 4.48 -26.73 -0.12 -1.69 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.69 7.82 -51.93 -0.41 1.28 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 267.58 15.07 4.03 4.03 Total: -1.00 -32.48 267.58 -6.52 -39.00 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -5.87 Total: -4.45 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -0.27 Total: -19.59 kcal Atomic # 7 Polarization: -28.46 SS G_CDS: 0.76 Total: -27.70 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.15 Total: -8.81 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.48 -6.52 -39.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300745424.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.392 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds