Wall clock time and date at job start Mon Mar 30 2020 02:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47175 * 2 1 4 4 H 1.09001 * 109.47286 * 55.00428 * 3 2 1 5 5 C 1.52998 * 109.47148 * 295.00054 * 3 2 1 6 6 C 1.53006 * 109.47221 * 175.00253 * 3 2 1 7 7 H 1.08999 * 110.33014 * 305.70087 * 6 3 2 8 8 C 1.54479 * 110.37215 * 183.45449 * 6 3 2 9 9 C 1.54513 * 104.05968 * 217.18794 * 8 6 3 10 10 C 1.54479 * 104.06355 * 359.97438 * 9 8 6 11 11 H 1.08999 * 110.36931 * 265.14540 * 10 9 8 12 12 C 1.50697 * 110.37199 * 142.92008 * 10 9 8 13 13 H 1.07999 * 120.00051 * 0.02562 * 12 10 9 14 14 C 1.37877 * 119.99907 * 179.97438 * 12 10 9 15 15 N 1.31514 * 120.00055 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99983 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47218 * 89.99774 * 16 14 12 18 18 H 1.48499 * 109.47144 * 209.99963 * 16 14 12 19 19 H 1.48507 * 109.46959 * 329.99560 * 16 14 12 20 20 O 1.44418 * 110.37350 * 67.95141 * 6 3 2 21 21 H 1.09006 * 109.47316 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47382 * 299.99723 * 1 2 3 23 23 H 1.09005 * 109.47185 * 59.99672 * 1 2 3 24 24 H 1.08999 * 109.47382 * 240.00277 * 2 1 3 25 25 H 1.08996 * 109.47400 * 120.00293 * 2 1 3 26 26 H 1.09006 * 109.47019 * 180.02562 * 5 3 2 27 27 H 1.08996 * 109.47188 * 299.99629 * 5 3 2 28 28 H 1.09002 * 109.47521 * 59.99972 * 5 3 2 29 29 H 1.08998 * 110.50997 * 335.83030 * 8 6 3 30 30 H 1.09001 * 110.51547 * 98.40555 * 8 6 3 31 31 H 1.09004 * 110.51070 * 118.64664 * 9 8 6 32 32 H 1.08996 * 110.50767 * 241.35346 * 9 8 6 33 33 H 0.97003 * 120.00261 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1265 -1.3073 6 6 3.5649 1.4443 0.1257 7 1 3.8734 0.8727 1.0009 8 6 4.0954 2.8924 0.2148 9 6 5.4158 2.8585 -0.5870 10 6 5.5271 1.3937 -1.0651 11 1 6.1383 0.8143 -0.3732 12 6 6.1114 1.3379 -2.4530 13 1 6.3839 2.2510 -2.9613 14 6 6.2990 0.1210 -3.0735 15 7 5.9686 -0.9909 -2.4539 16 14 7.0240 0.0517 -4.7937 17 1 8.5030 -0.0463 -4.7040 18 1 6.4915 -1.1364 -5.5078 19 1 6.6536 1.2830 -5.5369 20 8 4.1684 0.9005 -1.0683 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.9990 3.1541 -1.3075 27 1 2.0698 1.5876 -2.1491 28 1 0.5489 2.1253 -1.3970 29 1 3.3894 3.5865 -0.2412 30 1 4.2833 3.1672 1.2527 31 1 5.3626 3.5359 -1.4393 32 1 6.2587 3.1156 0.0544 33 1 6.1009 -1.8471 -2.8903 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306218538.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:55 Heat of formation + Delta-G solvation = -72.416051 kcal Electronic energy + Delta-G solvation = -13350.557454 eV Core-core repulsion = 11182.349201 eV Total energy + Delta-G solvation = -2168.208253 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.49521 -35.16732 -32.45274 -30.81686 -29.69794 -27.39072 -25.18726 -23.45406 -21.10010 -19.77236 -18.97839 -16.68076 -15.16161 -14.71752 -14.69044 -14.12132 -13.66841 -13.11596 -12.80504 -12.44492 -11.93926 -11.81514 -11.51878 -11.15640 -11.02210 -10.88472 -10.56001 -10.37768 -10.25467 -10.09763 -9.92488 -9.57397 -9.43170 -9.02543 -8.55569 -7.97624 -5.98303 -4.10206 3.32272 3.38934 3.42501 4.44658 5.05906 5.21984 5.40789 5.45285 5.61253 5.73586 5.80653 5.88125 5.96040 6.05272 6.11276 6.23117 6.33377 6.42942 6.47895 6.59125 6.60093 6.76775 6.78131 6.87172 6.89093 7.00204 7.13597 7.57360 7.92098 8.29095 8.62329 9.02085 9.59935 11.09676 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038090 B = 0.010970 C = 0.009556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.925292 B = 2551.711366 C = 2929.501581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.078 4.078 4 H 0.062 0.938 5 C -0.141 4.141 6 C 0.068 3.932 7 H 0.044 0.956 8 C -0.153 4.153 9 C -0.146 4.146 10 C 0.205 3.795 11 H 0.024 0.976 12 C -0.527 4.527 13 H 0.062 0.938 14 C 0.076 3.924 15 N -0.865 5.865 16 Si 0.891 3.109 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 O -0.344 6.344 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.069 4.117 4.628 9.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.097 4.097 4 H 0.080 0.920 5 C -0.198 4.198 6 C 0.009 3.991 7 H 0.062 0.938 8 C -0.191 4.191 9 C -0.184 4.184 10 C 0.150 3.850 11 H 0.041 0.959 12 C -0.565 4.565 13 H 0.080 0.920 14 C -0.129 4.129 15 N -0.501 5.501 16 Si 0.718 3.282 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 O -0.263 6.263 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.175 3.779 4.452 9.251 hybrid contribution 0.506 0.040 -0.669 0.840 sum -6.669 3.819 3.783 8.566 Atomic orbital electron populations 1.21831 0.96874 1.00849 1.01197 1.21495 0.94450 0.96734 1.02727 1.21114 0.94550 0.96076 0.97959 0.91957 1.21784 0.99220 1.00300 0.98502 1.22771 0.92518 0.92337 0.91504 0.93766 1.23021 0.98422 0.98351 0.99259 1.23017 0.95153 1.01653 0.98572 1.20493 0.81307 0.86552 0.96677 0.95874 1.21041 1.41653 0.92689 1.01098 0.91987 1.25080 0.94337 0.95778 0.97728 1.70035 1.45350 0.97468 1.37288 0.86628 0.79157 0.77736 0.84630 1.20573 1.21109 1.19761 1.89487 1.26677 1.71808 1.38358 0.93368 0.93500 0.92718 0.90732 0.92697 0.93233 0.91092 0.93880 0.91686 0.92777 0.91978 0.93033 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.67 37.16 0.36 -1.67 16 2 C -0.12 -1.96 5.29 -26.73 -0.14 -2.10 16 3 C -0.08 -1.35 2.27 -90.62 -0.21 -1.56 16 4 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 5 C -0.14 -2.42 8.53 37.16 0.32 -2.10 16 6 C 0.07 1.39 2.96 -25.95 -0.08 1.32 16 7 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 8 C -0.15 -2.86 6.47 -25.16 -0.16 -3.02 16 9 C -0.15 -3.16 6.62 -25.16 -0.17 -3.32 16 10 C 0.21 5.43 3.05 -27.11 -0.08 5.35 16 11 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 12 C -0.53 -15.10 8.78 -34.44 -0.30 -15.41 16 13 H 0.06 1.73 7.57 -52.49 -0.40 1.33 16 14 C 0.08 2.19 5.43 -17.82 -0.10 2.10 16 15 N -0.86 -26.03 13.07 55.43 0.72 -25.30 16 16 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 20 O -0.34 -8.94 9.63 -35.23 -0.34 -9.28 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.72 6.57 -51.93 -0.34 0.38 16 24 H 0.07 1.47 8.07 -51.93 -0.42 1.05 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.82 6.29 -51.93 -0.33 0.50 16 27 H 0.07 1.43 7.54 -51.93 -0.39 1.04 16 28 H 0.04 0.63 6.57 -51.93 -0.34 0.29 16 29 H 0.06 1.14 6.01 -51.93 -0.31 0.82 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.34 7.71 -51.93 -0.40 0.94 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 262.38 15.07 3.95 3.95 Total: -1.00 -30.06 262.38 -6.69 -36.75 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -5.45 Total: -2.35 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -0.56 Total: -20.42 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.72 Total: -25.30 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.34 Total: -9.28 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.06 -6.69 -36.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218538.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.669 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds