Wall clock time and date at job start Mon Mar 30 2020 02:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47175 * 2 1 4 4 H 1.09001 * 109.47286 * 55.00428 * 3 2 1 5 5 C 1.52998 * 109.47148 * 295.00054 * 3 2 1 6 6 C 1.53006 * 109.47221 * 175.00253 * 3 2 1 7 7 H 1.08999 * 110.33014 * 305.70087 * 6 3 2 8 8 C 1.54479 * 110.37215 * 183.45449 * 6 3 2 9 9 C 1.54513 * 104.05968 * 217.18794 * 8 6 3 10 10 C 1.54479 * 104.06355 * 359.97438 * 9 8 6 11 11 H 1.08999 * 110.36931 * 265.14540 * 10 9 8 12 12 C 1.50697 * 110.37199 * 142.92008 * 10 9 8 13 13 H 1.07999 * 120.00051 * 0.02562 * 12 10 9 14 14 C 1.37877 * 119.99907 * 179.97438 * 12 10 9 15 15 N 1.31514 * 120.00055 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99983 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47218 * 89.99774 * 16 14 12 18 18 H 1.48499 * 109.47144 * 209.99963 * 16 14 12 19 19 H 1.48507 * 109.46959 * 329.99560 * 16 14 12 20 20 O 1.44418 * 110.37350 * 67.95141 * 6 3 2 21 21 H 1.09006 * 109.47316 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47382 * 299.99723 * 1 2 3 23 23 H 1.09005 * 109.47185 * 59.99672 * 1 2 3 24 24 H 1.08999 * 109.47382 * 240.00277 * 2 1 3 25 25 H 1.08996 * 109.47400 * 120.00293 * 2 1 3 26 26 H 1.09006 * 109.47019 * 180.02562 * 5 3 2 27 27 H 1.08996 * 109.47188 * 299.99629 * 5 3 2 28 28 H 1.09002 * 109.47521 * 59.99972 * 5 3 2 29 29 H 1.08998 * 110.50997 * 335.83030 * 8 6 3 30 30 H 1.09001 * 110.51547 * 98.40555 * 8 6 3 31 31 H 1.09004 * 110.51070 * 118.64664 * 9 8 6 32 32 H 1.08996 * 110.50767 * 241.35346 * 9 8 6 33 33 H 0.97003 * 120.00261 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1265 -1.3073 6 6 3.5649 1.4443 0.1257 7 1 3.8734 0.8727 1.0009 8 6 4.0954 2.8924 0.2148 9 6 5.4158 2.8585 -0.5870 10 6 5.5271 1.3937 -1.0651 11 1 6.1383 0.8143 -0.3732 12 6 6.1114 1.3379 -2.4530 13 1 6.3839 2.2510 -2.9613 14 6 6.2990 0.1210 -3.0735 15 7 5.9686 -0.9909 -2.4539 16 14 7.0240 0.0517 -4.7937 17 1 8.5030 -0.0463 -4.7040 18 1 6.4915 -1.1364 -5.5078 19 1 6.6536 1.2830 -5.5369 20 8 4.1684 0.9005 -1.0683 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.9990 3.1541 -1.3075 27 1 2.0698 1.5876 -2.1491 28 1 0.5489 2.1253 -1.3970 29 1 3.3894 3.5865 -0.2412 30 1 4.2833 3.1672 1.2527 31 1 5.3626 3.5359 -1.4393 32 1 6.2587 3.1156 0.0544 33 1 6.1009 -1.8471 -2.8903 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306218538.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:55 Heat of formation + Delta-G solvation = -90.621703 kcal Electronic energy + Delta-G solvation = -13351.346911 eV Core-core repulsion = 11182.349201 eV Total energy + Delta-G solvation = -2168.997710 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.21277 -36.69206 -34.56311 -32.57525 -31.22185 -29.11327 -26.88630 -25.08486 -22.80314 -21.48826 -20.46587 -18.78981 -16.88113 -16.65432 -16.15577 -15.90840 -15.31700 -14.63247 -14.30574 -14.18048 -13.74702 -13.17960 -13.06794 -12.85083 -12.61019 -12.43381 -12.37711 -12.07662 -11.93873 -11.61871 -11.48885 -11.10561 -11.05379 -10.97069 -10.69489 -9.96118 -8.16976 -6.37015 1.38523 1.40552 1.51298 2.39419 3.05842 3.67479 3.83318 4.01746 4.18233 4.25523 4.32408 4.46909 4.52625 4.69912 4.76762 4.84110 4.87135 4.93811 5.06543 5.13176 5.16883 5.18511 5.28653 5.33056 5.41237 5.52409 5.60505 5.70375 5.73364 6.17591 6.58247 6.95446 7.38175 8.91735 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038090 B = 0.010970 C = 0.009556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.925292 B = 2551.711366 C = 2929.501581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.074 4.074 4 H 0.099 0.901 5 C -0.135 4.135 6 C 0.054 3.946 7 H 0.037 0.963 8 C -0.141 4.141 9 C -0.140 4.140 10 C 0.196 3.804 11 H -0.014 1.014 12 C -0.550 4.550 13 H 0.064 0.936 14 C 0.020 3.980 15 N -0.905 5.905 16 Si 0.963 3.037 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.265 1.265 20 O -0.376 6.376 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.032 0.968 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.238 5.625 4.927 11.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.093 4.093 4 H 0.117 0.883 5 C -0.192 4.192 6 C -0.004 4.004 7 H 0.055 0.945 8 C -0.178 4.178 9 C -0.178 4.178 10 C 0.140 3.860 11 H 0.003 0.997 12 C -0.588 4.588 13 H 0.082 0.918 14 C -0.181 4.181 15 N -0.542 5.542 16 Si 0.787 3.213 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.189 1.189 20 O -0.295 6.295 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.344 5.304 4.759 10.973 hybrid contribution 0.860 -0.446 -0.690 1.190 sum -7.484 4.858 4.069 9.806 Atomic orbital electron populations 1.21766 0.93806 1.01899 1.02471 1.21462 0.97121 0.96238 1.00599 1.21167 0.92089 0.96659 0.99345 0.88320 1.21724 1.00867 0.99873 0.96761 1.23115 0.94739 0.93249 0.89328 0.94524 1.22980 0.96816 0.97232 1.00773 1.22901 0.97677 0.98023 0.99204 1.20390 0.81356 0.89126 0.95134 0.99652 1.21471 1.42033 0.92988 1.02285 0.91788 1.25991 0.94709 0.95326 1.02118 1.70180 1.46813 0.98030 1.39206 0.85507 0.78728 0.77884 0.79206 1.19317 1.20846 1.18882 1.89416 1.26260 1.72957 1.40912 0.92610 0.91149 0.92354 0.94938 0.92859 0.92492 0.95220 0.90966 0.89839 0.89669 0.92196 0.91491 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.67 71.98 0.70 -2.80 16 2 C -0.12 -3.85 5.29 30.59 0.16 -3.69 16 3 C -0.07 -2.43 2.27 -10.79 -0.02 -2.45 16 4 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 5 C -0.14 -4.41 8.53 71.98 0.61 -3.80 16 6 C 0.05 2.20 2.96 31.10 0.09 2.29 16 7 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 8 C -0.14 -4.93 6.47 31.61 0.20 -4.73 16 9 C -0.14 -5.96 6.62 31.61 0.21 -5.75 16 10 C 0.20 10.68 3.05 30.35 0.09 10.78 16 11 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 12 C -0.55 -32.30 8.78 25.60 0.22 -32.07 16 13 H 0.06 3.61 7.57 -2.91 -0.02 3.59 16 14 C 0.02 1.19 5.43 84.65 0.46 1.65 16 15 N -0.90 -56.40 13.07 21.45 0.28 -56.12 16 16 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 20 O -0.38 -20.16 9.63 -148.98 -1.43 -21.60 16 21 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.06 1.38 6.57 -2.38 -0.02 1.37 16 24 H 0.03 1.32 8.07 -2.39 -0.02 1.30 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 1.75 6.29 -2.38 -0.02 1.73 16 27 H 0.03 1.19 7.54 -2.39 -0.02 1.17 16 28 H 0.07 1.91 6.57 -2.39 -0.02 1.89 16 29 H 0.08 2.63 6.01 -2.39 -0.01 2.62 16 30 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.06 2.54 7.71 -2.38 -0.02 2.52 16 32 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -67.26 262.38 4.66 -62.60 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 1.06 Total: 8.44 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 2.73 Total: -40.57 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.28 Total: -56.12 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -1.43 Total: -21.60 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -67.26 4.66 -62.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218538.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.018 kcal (2) G-P(sol) polarization free energy of solvation -67.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds