Wall clock time and date at job start Mon Mar 30 2020 02:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.53001 * 109.47242 * 295.00551 * 3 2 1 6 6 C 1.52994 * 109.47404 * 175.00005 * 3 2 1 7 7 H 1.08995 * 109.82584 * 305.57059 * 6 3 2 8 8 C 1.54382 * 109.83462 * 184.58482 * 6 3 2 9 9 C 1.55302 * 102.25577 * 219.13143 * 8 6 3 10 10 C 1.54943 * 100.94187 * 34.13577 * 9 8 6 11 11 H 1.09002 * 110.30924 * 82.46909 * 10 9 8 12 12 C 1.50702 * 110.39474 * 204.59714 * 10 9 8 13 13 H 1.08005 * 119.99615 * 357.20907 * 12 10 9 14 14 C 1.37871 * 120.00060 * 177.21666 * 12 10 9 15 15 N 1.31514 * 120.00473 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 119.99809 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47072 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46902 * 119.99614 * 16 14 12 19 19 H 1.48499 * 109.47061 * 239.99704 * 16 14 12 20 20 O 1.43241 * 109.82904 * 66.45502 * 6 3 2 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 26 26 H 1.08996 * 109.47271 * 180.02562 * 5 3 2 27 27 H 1.09008 * 109.46731 * 299.99706 * 5 3 2 28 28 H 1.08998 * 109.47430 * 59.99652 * 5 3 2 29 29 H 1.08998 * 110.84641 * 337.32784 * 8 6 3 30 30 H 1.09004 * 110.84678 * 100.93646 * 8 6 3 31 31 H 1.08997 * 111.12527 * 276.21235 * 9 8 6 32 32 H 1.09007 * 111.15984 * 152.06990 * 9 8 6 33 33 H 0.96992 * 120.00456 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5647 1.4444 0.1257 7 1 3.8639 0.8729 1.0043 8 6 4.0789 2.8954 0.2423 9 6 5.3730 2.8565 -0.6153 10 6 4.9651 1.8469 -1.7176 11 1 4.3920 2.3489 -2.4971 12 6 6.1872 1.1917 -2.3079 13 1 7.1717 1.4884 -1.9775 14 6 6.0483 0.2136 -3.2696 15 7 4.8495 -0.1480 -3.6716 16 14 7.5632 -0.5981 -4.0018 17 1 8.7828 -0.0179 -3.3844 18 1 7.5204 -2.0582 -3.7344 19 1 7.5905 -0.3638 -5.4679 20 8 4.1499 0.8711 -1.0493 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.9988 3.1541 -1.3075 27 1 2.0698 1.5875 -2.1492 28 1 0.5488 2.1253 -1.3968 29 1 3.3574 3.5974 -0.1757 30 1 4.3076 3.1438 1.2788 31 1 6.2177 2.4849 -0.0352 32 1 5.5925 3.8357 -1.0411 33 1 4.7518 -0.8363 -4.3479 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306218539.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:57 Heat of formation + Delta-G solvation = -71.923945 kcal Electronic energy + Delta-G solvation = -13428.862911 eV Core-core repulsion = 11260.675997 eV Total energy + Delta-G solvation = -2168.186914 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.61595 -35.00355 -32.43044 -30.85380 -29.58325 -27.52884 -25.14930 -23.39262 -20.81406 -20.15417 -18.79942 -16.53328 -15.57094 -14.76227 -14.53183 -14.00762 -13.86779 -13.00858 -12.58171 -12.16545 -11.93095 -11.67764 -11.52742 -11.18616 -10.98726 -10.89952 -10.53106 -10.42602 -10.26963 -10.06440 -10.00062 -9.59212 -9.52989 -9.00780 -8.51435 -7.74639 -5.95365 -4.07648 3.32435 3.40299 3.43943 4.46394 5.06001 5.29843 5.44926 5.48593 5.63810 5.66640 5.80526 5.90514 5.99287 6.10052 6.14755 6.25014 6.32620 6.45634 6.56548 6.61942 6.62644 6.70644 6.82103 6.85784 6.94267 7.01582 7.18549 7.67512 7.94550 8.34141 8.72645 9.12129 9.62895 11.11976 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040246 B = 0.011202 C = 0.009538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.549709 B = 2498.892692 C = 2934.931718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.095 4.095 4 H 0.057 0.943 5 C -0.144 4.144 6 C 0.077 3.923 7 H 0.053 0.947 8 C -0.155 4.155 9 C -0.149 4.149 10 C 0.213 3.787 11 H 0.025 0.975 12 C -0.535 4.535 13 H 0.061 0.939 14 C 0.078 3.922 15 N -0.862 5.862 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.284 1.284 20 O -0.348 6.348 21 H 0.044 0.956 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.460 3.224 6.158 8.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.114 4.114 4 H 0.075 0.925 5 C -0.201 4.201 6 C 0.017 3.983 7 H 0.071 0.929 8 C -0.193 4.193 9 C -0.186 4.186 10 C 0.157 3.843 11 H 0.043 0.957 12 C -0.573 4.573 13 H 0.079 0.921 14 C -0.127 4.127 15 N -0.498 5.498 16 Si 0.716 3.284 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 O -0.268 6.268 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.596 2.901 5.960 8.675 hybrid contribution 0.777 -0.256 -0.248 0.855 sum -4.819 2.645 5.712 7.927 Atomic orbital electron populations 1.21826 0.97037 1.00722 1.01125 1.21466 0.94330 0.96850 1.02559 1.21451 0.96268 0.95972 0.97672 0.92465 1.21836 0.99399 1.00041 0.98864 1.22540 0.91693 0.92462 0.91563 0.92881 1.23193 0.98530 0.97899 0.99656 1.23324 0.96306 1.00398 0.98615 1.20475 0.89576 0.85391 0.88828 0.95694 1.21175 0.91803 1.22861 1.21416 0.92063 1.25049 0.95630 0.96215 0.95835 1.70042 1.21358 1.29374 1.29041 0.86615 0.83497 0.79461 0.78829 1.19716 1.20908 1.20968 1.88813 1.64715 1.37543 1.35689 0.93652 0.92700 0.93481 0.92988 0.90532 0.93582 0.90576 0.93952 0.91430 0.92327 0.91842 0.92291 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 37.16 0.36 -1.76 16 2 C -0.11 -1.97 5.27 -26.73 -0.14 -2.12 16 3 C -0.09 -1.68 2.21 -90.62 -0.20 -1.88 16 4 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 5 C -0.14 -2.61 8.48 37.16 0.32 -2.29 16 6 C 0.08 1.56 3.21 -26.01 -0.08 1.48 16 7 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 8 C -0.16 -2.85 6.36 -24.79 -0.16 -3.01 16 9 C -0.15 -3.16 6.53 -24.49 -0.16 -3.32 16 10 C 0.21 5.54 3.20 -26.86 -0.09 5.45 16 11 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 12 C -0.53 -15.28 8.81 -34.44 -0.30 -15.58 16 13 H 0.06 1.71 7.77 -52.48 -0.41 1.30 16 14 C 0.08 2.25 5.42 -17.82 -0.10 2.15 16 15 N -0.86 -25.72 12.93 55.43 0.72 -25.01 16 16 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 O -0.35 -9.00 9.02 -35.23 -0.32 -9.32 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.77 6.56 -51.93 -0.34 0.43 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.08 1.56 8.01 -51.93 -0.42 1.14 16 26 H 0.05 0.80 6.34 -51.93 -0.33 0.47 16 27 H 0.08 1.66 7.54 -51.92 -0.39 1.27 16 28 H 0.04 0.66 6.56 -51.93 -0.34 0.32 16 29 H 0.07 1.17 6.07 -51.93 -0.32 0.85 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.35 8.05 -51.93 -0.42 0.94 16 32 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 262.33 15.07 3.95 3.95 Total: -1.00 -29.81 262.33 -6.70 -36.51 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -5.48 Total: -1.89 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -0.55 Total: -20.88 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.72 Total: -25.01 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.32 Total: -9.32 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.81 -6.70 -36.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218539.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.415 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds