Wall clock time and date at job start Mon Mar 30 2020 02:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.53001 * 109.47242 * 295.00551 * 3 2 1 6 6 C 1.52994 * 109.47404 * 175.00005 * 3 2 1 7 7 H 1.08995 * 109.82584 * 305.57059 * 6 3 2 8 8 C 1.54382 * 109.83462 * 184.58482 * 6 3 2 9 9 C 1.55302 * 102.25577 * 219.13143 * 8 6 3 10 10 C 1.54943 * 100.94187 * 34.13577 * 9 8 6 11 11 H 1.09002 * 110.30924 * 82.46909 * 10 9 8 12 12 C 1.50702 * 110.39474 * 204.59714 * 10 9 8 13 13 H 1.08005 * 119.99615 * 357.20907 * 12 10 9 14 14 C 1.37871 * 120.00060 * 177.21666 * 12 10 9 15 15 N 1.31514 * 120.00473 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 119.99809 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47072 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46902 * 119.99614 * 16 14 12 19 19 H 1.48499 * 109.47061 * 239.99704 * 16 14 12 20 20 O 1.43241 * 109.82904 * 66.45502 * 6 3 2 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 26 26 H 1.08996 * 109.47271 * 180.02562 * 5 3 2 27 27 H 1.09008 * 109.46731 * 299.99706 * 5 3 2 28 28 H 1.08998 * 109.47430 * 59.99652 * 5 3 2 29 29 H 1.08998 * 110.84641 * 337.32784 * 8 6 3 30 30 H 1.09004 * 110.84678 * 100.93646 * 8 6 3 31 31 H 1.08997 * 111.12527 * 276.21235 * 9 8 6 32 32 H 1.09007 * 111.15984 * 152.06990 * 9 8 6 33 33 H 0.96992 * 120.00456 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5647 1.4444 0.1257 7 1 3.8639 0.8729 1.0043 8 6 4.0789 2.8954 0.2423 9 6 5.3730 2.8565 -0.6153 10 6 4.9651 1.8469 -1.7176 11 1 4.3920 2.3489 -2.4971 12 6 6.1872 1.1917 -2.3079 13 1 7.1717 1.4884 -1.9775 14 6 6.0483 0.2136 -3.2696 15 7 4.8495 -0.1480 -3.6716 16 14 7.5632 -0.5981 -4.0018 17 1 8.7828 -0.0179 -3.3844 18 1 7.5204 -2.0582 -3.7344 19 1 7.5905 -0.3638 -5.4679 20 8 4.1499 0.8711 -1.0493 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.9988 3.1541 -1.3075 27 1 2.0698 1.5875 -2.1492 28 1 0.5488 2.1253 -1.3968 29 1 3.3574 3.5974 -0.1757 30 1 4.3076 3.1438 1.2788 31 1 6.2177 2.4849 -0.0352 32 1 5.5925 3.8357 -1.0411 33 1 4.7518 -0.8363 -4.3479 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306218539.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:56 Heat of formation + Delta-G solvation = -89.771669 kcal Electronic energy + Delta-G solvation = -13429.636846 eV Core-core repulsion = 11260.675997 eV Total energy + Delta-G solvation = -2168.960849 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.31664 -36.55130 -34.52812 -32.59196 -31.13346 -29.24183 -26.93152 -24.99172 -22.51467 -21.83157 -20.33141 -18.62429 -17.28136 -16.72879 -16.05157 -15.68097 -15.44362 -14.65916 -14.27060 -13.73664 -13.64999 -13.26057 -13.02291 -12.83064 -12.72455 -12.43308 -12.33872 -12.13539 -11.98934 -11.71630 -11.45673 -11.23255 -11.05600 -10.91527 -10.66728 -9.66646 -8.12499 -6.33113 1.38734 1.40039 1.52297 2.41002 3.08956 3.63929 3.92296 3.95603 4.18555 4.24045 4.32508 4.49643 4.56407 4.72645 4.75332 4.81959 4.86010 4.96245 5.06591 5.11973 5.15301 5.20076 5.32100 5.34825 5.42501 5.53977 5.60940 5.72656 5.82922 6.23084 6.65112 7.15564 7.43330 8.94991 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040246 B = 0.011202 C = 0.009538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.549709 B = 2498.892692 C = 2934.931718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.090 4.090 4 H 0.094 0.906 5 C -0.136 4.136 6 C 0.060 3.940 7 H 0.057 0.943 8 C -0.141 4.141 9 C -0.143 4.143 10 C 0.207 3.793 11 H -0.009 1.009 12 C -0.560 4.560 13 H 0.061 0.939 14 C 0.023 3.977 15 N -0.899 5.899 16 Si 0.959 3.041 17 H -0.263 1.263 18 H -0.282 1.282 19 H -0.275 1.275 20 O -0.382 6.382 21 H 0.069 0.931 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.030 0.970 26 H 0.052 0.948 27 H 0.025 0.975 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.758 3.973 7.680 10.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.109 4.109 4 H 0.112 0.888 5 C -0.193 4.193 6 C 0.002 3.998 7 H 0.075 0.925 8 C -0.178 4.178 9 C -0.181 4.181 10 C 0.151 3.849 11 H 0.009 0.991 12 C -0.597 4.597 13 H 0.080 0.920 14 C -0.179 4.179 15 N -0.536 5.536 16 Si 0.783 3.217 17 H -0.187 1.187 18 H -0.207 1.207 19 H -0.201 1.201 20 O -0.302 6.302 21 H 0.088 0.912 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.891 3.661 7.493 10.211 hybrid contribution 0.838 -0.484 -0.689 1.188 sum -5.052 3.177 6.805 9.051 Atomic orbital electron populations 1.21764 0.94251 1.01784 1.02193 1.21423 0.96778 0.96322 1.00598 1.21458 0.94404 0.96501 0.98515 0.88786 1.21740 1.00710 0.99564 0.97325 1.22900 0.93472 0.93741 0.89696 0.92501 1.23153 0.96876 0.96659 1.01134 1.23213 0.97757 0.99598 0.97555 1.20315 0.88517 0.86271 0.89763 0.99129 1.21624 0.92839 1.23228 1.22034 0.92043 1.25928 0.98728 0.96901 0.96328 1.70191 1.23624 1.30042 1.29746 0.85523 0.79813 0.78128 0.78221 1.18664 1.20743 1.20084 1.88730 1.65291 1.38534 1.37652 0.91165 0.92890 0.92594 0.92407 0.95071 0.92951 0.95535 0.91395 0.90090 0.88881 0.92081 0.90797 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.67 71.98 0.70 -3.02 16 2 C -0.11 -3.84 5.27 30.59 0.16 -3.68 16 3 C -0.09 -3.03 2.21 -10.80 -0.02 -3.06 16 4 H 0.09 2.53 8.14 -2.38 -0.02 2.52 16 5 C -0.14 -4.85 8.48 71.98 0.61 -4.24 16 6 C 0.06 2.40 3.21 31.06 0.10 2.50 16 7 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 8 C -0.14 -4.83 6.36 31.85 0.20 -4.62 16 9 C -0.14 -5.98 6.53 32.05 0.21 -5.77 16 10 C 0.21 11.07 3.20 30.51 0.10 11.17 16 11 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 12 C -0.56 -32.71 8.81 25.60 0.23 -32.49 16 13 H 0.06 3.47 7.77 -2.91 -0.02 3.45 16 14 C 0.02 1.36 5.42 84.65 0.46 1.81 16 15 N -0.90 -55.67 12.93 21.44 0.28 -55.39 16 16 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 17 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 20 O -0.38 -20.32 9.02 -148.98 -1.34 -21.67 16 21 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.05 1.39 6.56 -2.39 -0.02 1.37 16 23 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.03 1.31 8.01 -2.39 -0.02 1.29 16 26 H 0.05 1.75 6.34 -2.39 -0.02 1.74 16 27 H 0.03 1.18 7.54 -2.38 -0.02 1.17 16 28 H 0.07 2.02 6.56 -2.39 -0.02 2.01 16 29 H 0.08 2.56 6.07 -2.39 -0.01 2.54 16 30 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.06 2.54 8.05 -2.39 -0.02 2.53 16 32 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 33 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -66.69 262.33 4.75 -61.94 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 1.05 Total: 9.25 kcal Atomic # 6 Polarization: -44.12 SS G_CDS: 2.74 Total: -41.38 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.28 Total: -55.39 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -1.34 Total: -21.67 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -66.69 4.75 -61.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218539.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.832 kcal (2) G-P(sol) polarization free energy of solvation -66.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds