Wall clock time and date at job start Mon Mar 30 2020 02:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47103 * 2 1 4 4 H 1.09005 * 109.47127 * 55.00395 * 3 2 1 5 5 C 1.52995 * 109.47202 * 295.00401 * 3 2 1 6 6 C 1.53001 * 109.47211 * 174.99851 * 3 2 1 7 7 H 1.08997 * 110.35136 * 60.69022 * 6 3 2 8 8 C 1.54940 * 110.31180 * 182.83494 * 6 3 2 9 9 C 1.55300 * 100.94415 * 155.36050 * 8 6 3 10 10 C 1.54377 * 102.25502 * 325.86750 * 9 8 6 11 11 H 1.09000 * 109.83189 * 261.84669 * 10 9 8 12 12 C 1.50695 * 109.83610 * 140.86829 * 10 9 8 13 13 H 1.08006 * 119.99951 * 0.41145 * 12 10 9 14 14 C 1.37873 * 120.00566 * 180.41294 * 12 10 9 15 15 N 1.31517 * 120.00586 * 179.97438 * 14 12 10 16 16 Si 1.86806 * 119.99814 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47162 * 89.99803 * 16 14 12 18 18 H 1.48498 * 109.47085 * 209.99933 * 16 14 12 19 19 H 1.48495 * 109.47093 * 330.00134 * 16 14 12 20 20 O 1.43245 * 107.58529 * 21.35358 * 10 9 8 21 21 H 1.09008 * 109.47228 * 300.00143 * 1 2 3 22 22 H 1.08996 * 109.47037 * 59.99840 * 1 2 3 23 23 H 1.09001 * 109.47225 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47057 * 240.00012 * 2 1 3 25 25 H 1.09005 * 109.46864 * 120.00252 * 2 1 3 26 26 H 1.09003 * 109.46930 * 299.99504 * 5 3 2 27 27 H 1.08999 * 109.47408 * 59.99937 * 5 3 2 28 28 H 1.09008 * 109.47178 * 180.02562 * 5 3 2 29 29 H 1.09007 * 111.12756 * 37.44000 * 8 6 3 30 30 H 1.09003 * 111.16152 * 273.29689 * 8 6 3 31 31 H 1.09006 * 110.85287 * 207.67375 * 9 8 6 32 32 H 1.09004 * 111.02471 * 84.13526 * 9 8 6 33 33 H 0.96996 * 119.99920 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1265 -1.3073 6 6 3.5648 1.4443 0.1258 7 1 4.0153 0.9188 -0.7163 8 6 4.0967 2.8977 0.1994 9 6 5.4424 2.6819 0.9439 10 6 5.1056 1.5161 1.8982 11 1 4.8740 1.9051 2.8898 12 6 6.2739 0.5678 1.9793 13 1 7.1736 0.7701 1.4170 14 6 6.1945 -0.5580 2.7712 15 7 7.2140 -1.3858 2.8416 16 14 4.6382 -0.9082 3.7433 17 1 3.7130 -1.7262 2.9185 18 1 4.9847 -1.6504 4.9819 19 1 3.9797 0.3735 4.1020 20 8 3.9637 0.8358 1.3643 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.0698 1.5875 -2.1491 27 1 0.5489 2.1253 -1.3968 28 1 1.9989 3.1541 -1.3074 29 1 3.4254 3.5330 0.7774 30 1 4.2604 3.3078 -0.7972 31 1 5.7230 3.5736 1.5046 32 1 6.2327 2.3983 0.2488 33 1 7.1582 -2.1776 3.3991 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306218540.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:58 Heat of formation + Delta-G solvation = -71.058278 kcal Electronic energy + Delta-G solvation = -13364.841822 eV Core-core repulsion = 11196.692446 eV Total energy + Delta-G solvation = -2168.149376 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.77211 -35.55043 -32.41669 -31.26572 -30.00222 -27.90901 -25.10137 -23.50013 -20.95261 -20.18615 -19.41949 -16.73228 -15.76181 -15.35820 -14.51862 -14.33192 -13.64927 -12.94808 -12.63365 -12.51703 -12.28359 -12.11176 -12.03876 -11.57788 -11.34445 -10.93325 -10.64218 -10.50833 -10.47315 -10.20030 -9.83812 -9.75390 -9.61603 -9.39006 -8.55054 -8.06144 -6.04493 -4.12636 3.45592 3.52119 3.62286 4.54651 4.74722 5.02628 5.21870 5.33137 5.44387 5.49980 5.64888 5.68464 5.71438 5.77754 5.91215 6.09290 6.14610 6.16703 6.22798 6.27543 6.37351 6.46651 6.50710 6.58420 6.73629 6.78475 6.85964 7.35683 7.70628 8.33737 8.52322 8.96345 9.60508 11.06410 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035109 B = 0.013180 C = 0.010420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.328000 B = 2123.908999 C = 2686.595198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.090 4.090 4 H 0.069 0.931 5 C -0.144 4.144 6 C 0.089 3.911 7 H 0.058 0.942 8 C -0.152 4.152 9 C -0.135 4.135 10 C 0.167 3.833 11 H 0.040 0.960 12 C -0.530 4.530 13 H 0.075 0.925 14 C 0.082 3.918 15 N -0.897 5.897 16 Si 0.902 3.098 17 H -0.274 1.274 18 H -0.301 1.301 19 H -0.266 1.266 20 O -0.388 6.388 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.213 6.351 -5.923 14.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.109 4.109 4 H 0.088 0.912 5 C -0.202 4.202 6 C 0.031 3.969 7 H 0.075 0.925 8 C -0.190 4.190 9 C -0.173 4.173 10 C 0.111 3.889 11 H 0.058 0.942 12 C -0.567 4.567 13 H 0.093 0.907 14 C -0.122 4.122 15 N -0.535 5.535 16 Si 0.731 3.269 17 H -0.200 1.200 18 H -0.228 1.228 19 H -0.190 1.190 20 O -0.309 6.309 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.240 6.027 -5.751 13.991 hybrid contribution -0.531 -0.152 0.385 0.673 sum -11.771 5.875 -5.367 14.208 Atomic orbital electron populations 1.21826 0.96686 1.01018 1.01246 1.21502 0.94727 0.96612 1.02784 1.21308 0.95357 0.96425 0.97801 0.91243 1.21838 1.00798 1.00270 0.97269 1.22702 0.92633 0.91770 0.89785 0.92458 1.23261 0.97935 0.97518 1.00242 1.23024 0.96387 0.98950 0.98950 1.20810 0.84915 0.90535 0.92599 0.94245 1.21343 0.99077 1.07720 1.28545 0.90727 1.25042 0.96099 0.95315 0.95719 1.69949 1.30855 1.13077 1.39648 0.86380 0.83432 0.78813 0.78240 1.20017 1.22833 1.19047 1.88421 1.49321 1.57599 1.35533 0.93091 0.92986 0.93251 0.92347 0.90928 0.92808 0.92678 0.92772 0.91606 0.91533 0.92063 0.91098 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 37.16 0.36 -1.57 16 2 C -0.12 -1.89 5.34 -26.73 -0.14 -2.04 16 3 C -0.09 -1.43 2.16 -90.62 -0.20 -1.62 16 4 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 5 C -0.14 -1.80 8.75 37.16 0.33 -1.48 16 6 C 0.09 1.70 2.96 -25.71 -0.08 1.63 16 7 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 8 C -0.15 -2.58 5.55 -24.49 -0.14 -2.72 16 9 C -0.14 -2.73 6.53 -24.79 -0.16 -2.89 16 10 C 0.17 4.13 2.82 -27.16 -0.08 4.05 16 11 H 0.04 1.00 7.18 -51.93 -0.37 0.63 16 12 C -0.53 -15.47 9.33 -34.44 -0.32 -15.80 16 13 H 0.07 2.32 7.76 -52.48 -0.41 1.91 16 14 C 0.08 2.46 5.47 -17.82 -0.10 2.37 16 15 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 16 Si 0.90 23.77 26.28 -169.99 -4.47 19.30 16 17 H -0.27 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 19 H -0.27 -6.82 6.53 56.52 0.37 -6.45 16 20 O -0.39 -9.35 7.91 -35.23 -0.28 -9.63 16 21 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 22 H 0.05 0.58 6.56 -51.93 -0.34 0.24 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 1.38 7.62 -51.93 -0.40 0.98 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.61 6.56 -51.93 -0.34 0.26 16 28 H 0.05 0.63 7.28 -51.92 -0.38 0.25 16 29 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 30 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.47 7.65 -51.93 -0.40 1.07 16 33 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 259.50 15.07 3.91 3.91 Total: -1.00 -31.23 259.50 -6.18 -37.41 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -5.60 Total: -3.51 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -0.52 Total: -20.07 kcal Atomic # 7 Polarization: -28.19 SS G_CDS: 0.77 Total: -27.42 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.28 Total: -9.63 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -4.47 Total: 19.30 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.23 -6.18 -37.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218540.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.649 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds