Wall clock time and date at job start Mon Mar 30 2020 02:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47103 * 2 1 4 4 H 1.09005 * 109.47127 * 55.00395 * 3 2 1 5 5 C 1.52995 * 109.47202 * 295.00401 * 3 2 1 6 6 C 1.53001 * 109.47211 * 174.99851 * 3 2 1 7 7 H 1.08997 * 110.35136 * 60.69022 * 6 3 2 8 8 C 1.54940 * 110.31180 * 182.83494 * 6 3 2 9 9 C 1.55300 * 100.94415 * 155.36050 * 8 6 3 10 10 C 1.54377 * 102.25502 * 325.86750 * 9 8 6 11 11 H 1.09000 * 109.83189 * 261.84669 * 10 9 8 12 12 C 1.50695 * 109.83610 * 140.86829 * 10 9 8 13 13 H 1.08006 * 119.99951 * 0.41145 * 12 10 9 14 14 C 1.37873 * 120.00566 * 180.41294 * 12 10 9 15 15 N 1.31517 * 120.00586 * 179.97438 * 14 12 10 16 16 Si 1.86806 * 119.99814 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47162 * 89.99803 * 16 14 12 18 18 H 1.48498 * 109.47085 * 209.99933 * 16 14 12 19 19 H 1.48495 * 109.47093 * 330.00134 * 16 14 12 20 20 O 1.43245 * 107.58529 * 21.35358 * 10 9 8 21 21 H 1.09008 * 109.47228 * 300.00143 * 1 2 3 22 22 H 1.08996 * 109.47037 * 59.99840 * 1 2 3 23 23 H 1.09001 * 109.47225 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47057 * 240.00012 * 2 1 3 25 25 H 1.09005 * 109.46864 * 120.00252 * 2 1 3 26 26 H 1.09003 * 109.46930 * 299.99504 * 5 3 2 27 27 H 1.08999 * 109.47408 * 59.99937 * 5 3 2 28 28 H 1.09008 * 109.47178 * 180.02562 * 5 3 2 29 29 H 1.09007 * 111.12756 * 37.44000 * 8 6 3 30 30 H 1.09003 * 111.16152 * 273.29689 * 8 6 3 31 31 H 1.09006 * 110.85287 * 207.67375 * 9 8 6 32 32 H 1.09004 * 111.02471 * 84.13526 * 9 8 6 33 33 H 0.96996 * 119.99920 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1265 -1.3073 6 6 3.5648 1.4443 0.1258 7 1 4.0153 0.9188 -0.7163 8 6 4.0967 2.8977 0.1994 9 6 5.4424 2.6819 0.9439 10 6 5.1056 1.5161 1.8982 11 1 4.8740 1.9051 2.8898 12 6 6.2739 0.5678 1.9793 13 1 7.1736 0.7701 1.4170 14 6 6.1945 -0.5580 2.7712 15 7 7.2140 -1.3858 2.8416 16 14 4.6382 -0.9082 3.7433 17 1 3.7130 -1.7262 2.9185 18 1 4.9847 -1.6504 4.9819 19 1 3.9797 0.3735 4.1020 20 8 3.9637 0.8358 1.3643 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.0698 1.5875 -2.1491 27 1 0.5489 2.1253 -1.3968 28 1 1.9989 3.1541 -1.3074 29 1 3.4254 3.5330 0.7774 30 1 4.2604 3.3078 -0.7972 31 1 5.7230 3.5736 1.5046 32 1 6.2327 2.3983 0.2488 33 1 7.1582 -2.1776 3.3991 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306218540.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:58 Heat of formation + Delta-G solvation = -90.877172 kcal Electronic energy + Delta-G solvation = -13365.701234 eV Core-core repulsion = 11196.692446 eV Total energy + Delta-G solvation = -2169.008788 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.39207 -36.91350 -34.63843 -32.86311 -31.49148 -29.45965 -26.61723 -25.02350 -22.44021 -21.93088 -20.79613 -18.93840 -17.35396 -17.02195 -16.30922 -15.69233 -15.11723 -14.71204 -14.34877 -14.19201 -13.84382 -13.35471 -13.28417 -12.87953 -12.70952 -12.56511 -12.45692 -12.23009 -11.78187 -11.67499 -11.54125 -11.34527 -11.28007 -11.08351 -10.82853 -9.96087 -8.36887 -6.48431 1.32181 1.40489 1.49966 2.35933 2.87907 3.41788 3.77243 3.88208 4.10305 4.24286 4.26890 4.39623 4.51426 4.63462 4.71699 4.75084 4.81011 4.91261 4.97668 5.10109 5.12930 5.14902 5.19677 5.28481 5.34095 5.46527 5.56225 5.57359 5.63276 6.14632 6.51850 6.74243 7.28968 8.77917 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035109 B = 0.013180 C = 0.010420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.328000 B = 2123.908999 C = 2686.595198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.085 4.085 4 H 0.070 0.930 5 C -0.138 4.138 6 C 0.074 3.926 7 H 0.044 0.956 8 C -0.134 4.134 9 C -0.135 4.135 10 C 0.163 3.837 11 H 0.036 0.964 12 C -0.538 4.538 13 H 0.039 0.961 14 C 0.027 3.973 15 N -0.942 5.942 16 Si 0.964 3.036 17 H -0.279 1.279 18 H -0.292 1.292 19 H -0.254 1.254 20 O -0.411 6.411 21 H 0.053 0.947 22 H 0.074 0.926 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.032 0.968 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.768 8.039 -6.649 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.103 4.103 4 H 0.089 0.911 5 C -0.195 4.195 6 C 0.017 3.983 7 H 0.062 0.938 8 C -0.171 4.171 9 C -0.172 4.172 10 C 0.107 3.893 11 H 0.054 0.946 12 C -0.576 4.576 13 H 0.057 0.943 14 C -0.172 4.172 15 N -0.582 5.582 16 Si 0.790 3.210 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.178 1.178 20 O -0.332 6.332 21 H 0.072 0.928 22 H 0.093 0.907 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.801 7.732 -6.488 17.098 hybrid contribution 0.325 -0.680 0.531 0.922 sum -13.475 7.052 -5.957 16.334 Atomic orbital electron populations 1.21775 0.93971 1.01861 1.02480 1.21510 0.97160 0.96555 1.00768 1.21290 0.92490 0.96594 0.99939 0.91135 1.21804 1.02228 1.00508 0.94951 1.23066 0.95193 0.92845 0.87242 0.93834 1.23225 0.95755 0.96308 1.01852 1.22964 0.98017 0.97898 0.98347 1.20680 0.83754 0.90889 0.93940 0.94631 1.21713 0.99823 1.08560 1.27495 0.94256 1.25877 0.99006 0.95342 0.97024 1.70065 1.32948 1.14008 1.41188 0.85412 0.79579 0.79001 0.76966 1.20481 1.21883 1.17771 1.88333 1.48514 1.58732 1.37647 0.92804 0.90707 0.92745 0.92530 0.94868 0.92653 0.90581 0.91371 0.89496 0.88364 0.89876 0.92536 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.67 71.98 0.70 -2.58 16 2 C -0.12 -3.72 5.34 30.59 0.16 -3.56 16 3 C -0.08 -2.44 2.16 -10.80 -0.02 -2.46 16 4 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 5 C -0.14 -2.85 8.75 71.98 0.63 -2.22 16 6 C 0.07 2.70 2.96 31.26 0.09 2.79 16 7 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 8 C -0.13 -4.11 5.55 32.05 0.18 -3.93 16 9 C -0.13 -5.24 6.53 31.85 0.21 -5.03 16 10 C 0.16 8.06 2.82 30.31 0.09 8.14 16 11 H 0.04 1.78 7.18 -2.39 -0.02 1.77 16 12 C -0.54 -32.38 9.33 25.60 0.24 -32.14 16 13 H 0.04 2.56 7.76 -2.91 -0.02 2.54 16 14 C 0.03 1.64 5.47 84.65 0.46 2.10 16 15 N -0.94 -61.05 13.96 21.45 0.30 -60.76 16 16 Si 0.96 49.92 26.28 68.60 1.80 51.72 16 17 H -0.28 -14.51 7.11 99.48 0.71 -13.80 16 18 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 19 H -0.25 -12.50 6.53 99.48 0.65 -11.85 16 20 O -0.41 -19.62 7.91 -148.98 -1.18 -20.80 16 21 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 22 H 0.07 1.37 6.56 -2.39 -0.02 1.36 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.03 1.25 7.62 -2.38 -0.02 1.23 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.08 1.29 6.56 -2.39 -0.02 1.27 16 28 H 0.07 1.24 7.28 -2.38 -0.02 1.23 16 29 H 0.09 2.34 8.06 -2.38 -0.02 2.33 16 30 H 0.10 2.43 8.05 -2.39 -0.02 2.41 16 31 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 32 H 0.06 2.33 7.65 -2.39 -0.02 2.31 16 33 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 Total: -1.00 -69.35 259.50 4.65 -64.70 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: 0.99 Total: 4.03 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 2.73 Total: -38.89 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.30 Total: -60.76 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -1.18 Total: -20.80 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 1.80 Total: 51.72 kcal Total: -69.35 4.65 -64.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218540.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.182 kcal (2) G-P(sol) polarization free energy of solvation -69.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds