Wall clock time and date at job start Mon Mar 30 2020 02:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.52997 * 109.47060 * 294.99684 * 3 2 1 6 6 C 1.53002 * 109.47233 * 175.00027 * 3 2 1 7 7 H 1.08998 * 110.32922 * 60.78986 * 6 3 2 8 8 C 1.54472 * 110.37312 * 183.16272 * 6 3 2 9 9 C 1.54514 * 104.06320 * 142.80821 * 8 6 3 10 10 C 1.54481 * 104.05996 * 0.02562 * 9 8 6 11 11 H 1.08994 * 110.37250 * 94.85696 * 10 9 8 12 12 C 1.50705 * 110.37068 * 217.18831 * 10 9 8 13 13 H 1.08005 * 119.99856 * 356.83643 * 12 10 9 14 14 C 1.37868 * 120.00123 * 176.83482 * 12 10 9 15 15 N 1.31520 * 120.00042 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00271 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47212 * 59.99484 * 16 14 12 18 18 H 1.48501 * 109.47325 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46766 * 299.99751 * 16 14 12 20 20 O 1.44425 * 104.80325 * 336.01858 * 10 9 8 21 21 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 23 23 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 24 24 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 25 25 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 5 3 2 27 27 H 1.08998 * 109.47533 * 59.99948 * 5 3 2 28 28 H 1.08996 * 109.47853 * 180.02562 * 5 3 2 29 29 H 1.09004 * 110.51317 * 261.45274 * 8 6 3 30 30 H 1.09004 * 110.51287 * 24.16685 * 8 6 3 31 31 H 1.09004 * 110.51028 * 241.35481 * 9 8 6 32 32 H 1.08998 * 110.51083 * 118.64216 * 9 8 6 33 33 H 0.97002 * 120.00126 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4445 0.1257 7 1 4.0150 0.9204 -0.7174 8 6 4.0958 2.8927 0.2075 9 6 5.2675 2.8069 1.2112 10 6 5.3060 1.3167 1.6165 11 1 6.0250 0.7749 1.0021 12 6 5.6531 1.1791 3.0766 13 1 5.8825 2.0571 3.6622 14 6 5.6776 -0.0676 3.6648 15 7 5.3976 -1.1367 2.9518 16 14 6.1071 -0.2383 5.4747 17 1 5.1274 0.5238 6.2899 18 1 6.0644 -1.6716 5.8606 19 1 7.4716 0.2973 5.7122 20 8 3.9679 0.8325 1.3700 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 2.0699 1.5874 -2.1492 27 1 0.5490 2.1252 -1.3971 28 1 1.9989 3.1540 -1.3077 29 1 4.4520 3.2246 -0.7678 30 1 3.3215 3.5630 0.5808 31 1 5.0723 3.4348 2.0806 32 1 6.2028 3.0963 0.7321 33 1 5.4145 -2.0139 3.3657 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306218541.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:59 Heat of formation + Delta-G solvation = -74.313483 kcal Electronic energy + Delta-G solvation = -13247.395025 eV Core-core repulsion = 11079.104493 eV Total energy + Delta-G solvation = -2168.290532 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.43994 -35.31276 -32.44178 -30.91440 -29.72993 -27.47005 -24.96934 -23.46816 -21.01992 -19.87479 -19.24034 -16.57977 -15.28493 -14.68135 -14.59608 -14.29602 -13.58598 -13.17823 -12.64769 -12.44936 -11.97328 -11.91221 -11.54984 -11.38129 -11.19325 -10.86630 -10.57574 -10.44222 -10.31603 -10.03851 -9.93219 -9.60533 -9.48465 -9.02057 -8.54374 -7.98660 -5.96809 -4.09107 3.34727 3.38964 3.41504 4.45443 5.00433 5.19822 5.38419 5.42444 5.64186 5.76143 5.77555 5.82395 5.88210 5.92164 6.08823 6.23081 6.28087 6.35679 6.38770 6.46937 6.53272 6.72800 6.76499 6.81995 6.89139 7.00820 7.03486 7.57080 7.92735 8.28877 8.61639 9.02933 9.60819 11.11029 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040122 B = 0.010527 C = 0.008896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.699087 B = 2659.130820 C = 3146.825485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.081 4.081 4 H 0.070 0.930 5 C -0.145 4.145 6 C 0.069 3.931 7 H 0.045 0.955 8 C -0.148 4.148 9 C -0.148 4.148 10 C 0.206 3.794 11 H 0.022 0.978 12 C -0.531 4.531 13 H 0.062 0.938 14 C 0.077 3.923 15 N -0.864 5.864 16 Si 0.891 3.109 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 O -0.345 6.345 21 H 0.047 0.953 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 4.432 -6.429 9.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.100 4.100 4 H 0.088 0.912 5 C -0.202 4.202 6 C 0.010 3.990 7 H 0.063 0.937 8 C -0.186 4.186 9 C -0.186 4.186 10 C 0.151 3.849 11 H 0.040 0.960 12 C -0.568 4.568 13 H 0.080 0.920 14 C -0.129 4.129 15 N -0.500 5.500 16 Si 0.719 3.281 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 O -0.264 6.264 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.173 4.081 -6.295 9.715 hybrid contribution 0.353 0.019 0.795 0.870 sum -5.820 4.100 -5.500 8.996 Atomic orbital electron populations 1.21823 0.96913 1.00860 1.01102 1.21479 0.94465 0.96602 1.02861 1.21133 0.94962 0.96412 0.97465 0.91156 1.21848 1.00676 1.00235 0.97444 1.22764 0.93319 0.91842 0.91066 0.93719 1.22953 0.98654 0.98142 0.98804 1.23051 0.96227 1.01538 0.97767 1.20470 0.81862 0.86407 0.96192 0.96015 1.21010 1.48298 0.92909 0.94604 0.91968 1.25075 0.93940 0.95959 0.97919 1.70035 1.46005 0.98102 1.35841 0.86689 0.78956 0.77036 0.85446 1.20099 1.21193 1.20142 1.89473 1.33138 1.68623 1.35189 0.93361 0.93064 0.93245 0.92780 0.90319 0.93041 0.92772 0.92917 0.92660 0.92102 0.91922 0.92993 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.16 0.36 -1.73 16 2 C -0.12 -2.01 5.34 -26.73 -0.14 -2.15 16 3 C -0.08 -1.41 2.06 -90.62 -0.19 -1.60 16 4 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 5 C -0.14 -1.99 8.76 37.16 0.33 -1.66 16 6 C 0.07 1.43 2.80 -25.96 -0.07 1.36 16 7 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 8 C -0.15 -2.77 5.62 -25.16 -0.14 -2.92 16 9 C -0.15 -3.22 6.61 -25.16 -0.17 -3.38 16 10 C 0.21 5.51 3.11 -27.10 -0.08 5.43 16 11 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 12 C -0.53 -15.32 8.78 -34.44 -0.30 -15.62 16 13 H 0.06 1.74 7.59 -52.48 -0.40 1.34 16 14 C 0.08 2.22 5.42 -17.82 -0.10 2.12 16 15 N -0.86 -26.11 12.94 55.43 0.72 -25.39 16 16 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 O -0.35 -9.16 9.92 -35.23 -0.35 -9.51 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.61 6.57 -51.93 -0.34 0.26 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.08 1.63 7.62 -51.93 -0.40 1.23 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.66 6.56 -51.93 -0.34 0.32 16 28 H 0.05 0.69 7.32 -51.93 -0.38 0.31 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.07 7.80 -51.93 -0.41 0.67 16 31 H 0.06 1.37 7.73 -51.93 -0.40 0.96 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 264.64 15.07 3.99 3.99 Total: -1.00 -30.40 264.64 -6.77 -37.17 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -5.60 Total: -2.85 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -0.51 Total: -20.15 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.72 Total: -25.39 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.35 Total: -9.51 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.40 -6.77 -37.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218541.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.140 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds