Wall clock time and date at job start Mon Mar 30 2020 02:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.52997 * 109.47060 * 294.99684 * 3 2 1 6 6 C 1.53002 * 109.47233 * 175.00027 * 3 2 1 7 7 H 1.08998 * 110.32922 * 60.78986 * 6 3 2 8 8 C 1.54472 * 110.37312 * 183.16272 * 6 3 2 9 9 C 1.54514 * 104.06320 * 142.80821 * 8 6 3 10 10 C 1.54481 * 104.05996 * 0.02562 * 9 8 6 11 11 H 1.08994 * 110.37250 * 94.85696 * 10 9 8 12 12 C 1.50705 * 110.37068 * 217.18831 * 10 9 8 13 13 H 1.08005 * 119.99856 * 356.83643 * 12 10 9 14 14 C 1.37868 * 120.00123 * 176.83482 * 12 10 9 15 15 N 1.31520 * 120.00042 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00271 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47212 * 59.99484 * 16 14 12 18 18 H 1.48501 * 109.47325 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46766 * 299.99751 * 16 14 12 20 20 O 1.44425 * 104.80325 * 336.01858 * 10 9 8 21 21 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 23 23 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 24 24 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 25 25 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 5 3 2 27 27 H 1.08998 * 109.47533 * 59.99948 * 5 3 2 28 28 H 1.08996 * 109.47853 * 180.02562 * 5 3 2 29 29 H 1.09004 * 110.51317 * 261.45274 * 8 6 3 30 30 H 1.09004 * 110.51287 * 24.16685 * 8 6 3 31 31 H 1.09004 * 110.51028 * 241.35481 * 9 8 6 32 32 H 1.08998 * 110.51083 * 118.64216 * 9 8 6 33 33 H 0.97002 * 120.00126 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4445 0.1257 7 1 4.0150 0.9204 -0.7174 8 6 4.0958 2.8927 0.2075 9 6 5.2675 2.8069 1.2112 10 6 5.3060 1.3167 1.6165 11 1 6.0250 0.7749 1.0021 12 6 5.6531 1.1791 3.0766 13 1 5.8825 2.0571 3.6622 14 6 5.6776 -0.0676 3.6648 15 7 5.3976 -1.1367 2.9518 16 14 6.1071 -0.2383 5.4747 17 1 5.1274 0.5238 6.2899 18 1 6.0644 -1.6716 5.8606 19 1 7.4716 0.2973 5.7122 20 8 3.9679 0.8325 1.3700 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 2.0699 1.5874 -2.1492 27 1 0.5490 2.1252 -1.3971 28 1 1.9989 3.1540 -1.3077 29 1 4.4520 3.2246 -0.7678 30 1 3.3215 3.5630 0.5808 31 1 5.0723 3.4348 2.0806 32 1 6.2028 3.0963 0.7321 33 1 5.4145 -2.0139 3.3657 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306218541.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:59 Heat of formation + Delta-G solvation = -92.857225 kcal Electronic energy + Delta-G solvation = -13248.199142 eV Core-core repulsion = 11079.104493 eV Total energy + Delta-G solvation = -2169.094649 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.17310 -36.81918 -34.57348 -32.66148 -31.25808 -29.15234 -26.60255 -25.07414 -22.77797 -21.54557 -20.75702 -18.71544 -16.98389 -16.51822 -16.31010 -15.96799 -15.19266 -14.64581 -14.24850 -14.10120 -13.65304 -13.26082 -13.14015 -12.82160 -12.70658 -12.44568 -12.40447 -12.14075 -11.99944 -11.64081 -11.43661 -11.24809 -11.07610 -10.94232 -10.70128 -9.99480 -8.16450 -6.37238 1.38634 1.42397 1.49896 2.39552 3.05480 3.62266 3.79771 4.01149 4.19732 4.26373 4.30878 4.44420 4.53518 4.71973 4.73873 4.80235 4.83627 4.98150 5.03466 5.10577 5.13840 5.16422 5.22861 5.33976 5.37208 5.50057 5.58259 5.64936 5.72663 6.16077 6.55688 6.95284 7.37949 8.91929 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040122 B = 0.010527 C = 0.008896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.699087 B = 2659.130820 C = 3146.825485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.077 4.077 4 H 0.061 0.939 5 C -0.136 4.136 6 C 0.057 3.943 7 H 0.038 0.962 8 C -0.135 4.135 9 C -0.142 4.142 10 C 0.196 3.804 11 H -0.014 1.014 12 C -0.556 4.556 13 H 0.065 0.935 14 C 0.020 3.980 15 N -0.903 5.903 16 Si 0.964 3.036 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.262 1.262 20 O -0.381 6.381 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.075 0.925 24 H 0.056 0.944 25 H 0.030 0.970 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.007 5.909 -6.901 11.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.096 4.096 4 H 0.079 0.921 5 C -0.193 4.193 6 C -0.002 4.002 7 H 0.056 0.944 8 C -0.172 4.172 9 C -0.180 4.180 10 C 0.140 3.860 11 H 0.004 0.996 12 C -0.593 4.593 13 H 0.084 0.916 14 C -0.182 4.182 15 N -0.540 5.540 16 Si 0.788 3.212 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.187 1.187 20 O -0.301 6.301 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.094 0.906 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.145 5.577 -6.776 11.317 hybrid contribution 0.665 -0.461 0.879 1.195 sum -6.480 5.116 -5.897 10.146 Atomic orbital electron populations 1.21762 0.93974 1.01864 1.02299 1.21438 0.97053 0.96331 1.00601 1.21136 0.92288 0.96648 0.99499 0.92088 1.21795 1.02218 1.00383 0.94927 1.23109 0.95808 0.92701 0.88554 0.94412 1.22907 0.97731 0.96945 0.99643 1.22941 0.98576 0.97760 0.98731 1.20391 0.81539 0.89250 0.94842 0.99614 1.21466 1.48506 0.93328 0.96004 0.91638 1.26007 0.93707 0.95537 1.02937 1.70187 1.47299 0.98565 1.37957 0.85549 0.79240 0.77183 0.79270 1.19465 1.20711 1.18705 1.89395 1.32643 1.70060 1.38028 0.92586 0.93187 0.90600 0.92529 0.95144 0.92417 0.90525 0.91650 0.89418 0.90402 0.92159 0.91260 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.67 71.98 0.70 -3.01 16 2 C -0.12 -4.01 5.34 30.60 0.16 -3.85 16 3 C -0.08 -2.59 2.06 -10.79 -0.02 -2.61 16 4 H 0.06 2.15 8.12 -2.39 -0.02 2.13 16 5 C -0.14 -3.27 8.76 71.98 0.63 -2.63 16 6 C 0.06 2.34 2.80 31.10 0.09 2.42 16 7 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 8 C -0.13 -4.78 5.62 31.61 0.18 -4.60 16 9 C -0.14 -6.09 6.61 31.61 0.21 -5.88 16 10 C 0.20 10.78 3.11 30.35 0.09 10.87 16 11 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 12 C -0.56 -32.84 8.78 25.60 0.22 -32.61 16 13 H 0.07 3.70 7.59 -2.91 -0.02 3.67 16 14 C 0.02 1.18 5.42 84.65 0.46 1.64 16 15 N -0.90 -56.55 12.94 21.44 0.28 -56.27 16 16 Si 0.96 45.31 29.54 68.60 2.03 47.33 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 O -0.38 -20.98 9.92 -148.98 -1.48 -22.46 16 21 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 22 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.08 1.59 6.57 -2.39 -0.02 1.58 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.03 1.31 7.62 -2.39 -0.02 1.29 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 1.52 6.56 -2.39 -0.02 1.51 16 28 H 0.06 1.42 7.32 -2.39 -0.02 1.41 16 29 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.08 2.51 7.80 -2.38 -0.02 2.49 16 31 H 0.06 2.58 7.73 -2.39 -0.02 2.56 16 32 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -68.06 264.64 4.59 -63.47 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.05 Total: 8.19 kcal Atomic # 6 Polarization: -42.98 SS G_CDS: 2.72 Total: -40.26 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.28 Total: -56.27 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -1.48 Total: -22.46 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -68.06 4.59 -63.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218541.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.390 kcal (2) G-P(sol) polarization free energy of solvation -68.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds