Wall clock time and date at job start Mon Mar 30 2020 01:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47213 * 2 1 4 4 C 1.53001 * 109.89559 * 179.67884 * 3 2 1 5 5 C 1.52994 * 109.47265 * 59.69225 * 4 3 2 6 6 C 1.54381 * 109.83119 * 58.74680 * 3 2 1 7 7 C 1.55417 * 102.30880 * 261.77182 * 6 3 2 8 8 C 1.54949 * 100.89136 * 325.99130 * 7 6 3 9 9 H 1.09000 * 110.30321 * 277.35565 * 8 7 6 10 10 C 1.50696 * 110.30858 * 155.29016 * 8 7 6 11 11 H 1.08006 * 119.99962 * 1.38480 * 10 8 7 12 12 C 1.37879 * 120.00097 * 181.38787 * 10 8 7 13 13 N 1.31514 * 119.99927 * 179.97438 * 12 10 8 14 14 Si 1.86798 * 119.99608 * 359.97438 * 12 10 8 15 15 H 1.48499 * 109.47246 * 90.00522 * 14 12 10 16 16 H 1.48497 * 109.47292 * 329.99800 * 14 12 10 17 17 H 1.48511 * 109.46759 * 210.00045 * 14 12 10 18 18 O 1.43241 * 109.83030 * 300.61425 * 3 2 1 19 19 H 1.08999 * 109.47478 * 53.58675 * 1 2 3 20 20 H 1.08997 * 109.47405 * 173.58993 * 1 2 3 21 21 H 1.09001 * 109.47130 * 293.59020 * 1 2 3 22 22 H 1.09008 * 109.46888 * 240.00391 * 2 1 3 23 23 H 1.08994 * 109.47576 * 120.00189 * 2 1 3 24 24 H 1.09003 * 109.46586 * 179.68995 * 4 3 2 25 25 H 1.08995 * 109.47377 * 299.68950 * 4 3 2 26 26 H 1.09003 * 109.47485 * 53.85125 * 5 4 3 27 27 H 1.08997 * 109.47515 * 173.84637 * 5 4 3 28 28 H 1.09000 * 109.47245 * 293.85034 * 5 4 3 29 29 H 1.09003 * 110.84248 * 20.03139 * 6 3 2 30 30 H 1.08996 * 110.84812 * 143.44805 * 6 3 2 31 31 H 1.08995 * 111.21252 * 208.05819 * 7 6 3 32 32 H 1.09004 * 111.08441 * 83.86027 * 7 6 3 33 33 H 0.97009 * 119.99718 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4538 0.0081 5 6 4.0919 0.7274 -1.2331 6 6 1.5042 2.1875 1.2415 7 6 0.2822 2.9556 0.6652 8 6 0.7857 3.2762 -0.7647 9 1 1.4133 4.1674 -0.7537 10 6 -0.3808 3.4705 -1.6986 11 1 -1.3910 3.4005 -1.3228 12 6 -0.1587 3.7376 -3.0329 13 7 -1.1768 3.9066 -3.8481 14 14 1.5884 3.8593 -3.6827 15 1 2.0444 2.5190 -4.1309 16 1 2.4839 4.3523 -2.6056 17 1 1.6258 4.8035 -4.8284 18 8 1.5550 2.1294 -1.1597 19 1 -0.3634 0.6100 -0.8270 20 1 -0.3634 -1.0212 -0.1147 21 1 -0.3633 0.4113 0.9418 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 3.9256 2.4842 0.0025 25 1 3.9323 0.9492 0.9036 26 1 3.6430 1.1639 -2.1253 27 1 5.1759 0.8294 -1.2849 28 1 3.8288 -0.3287 -1.1736 29 1 1.1919 1.4825 2.0120 30 1 2.2509 2.8795 1.6309 31 1 0.0894 3.8689 1.2279 32 1 -0.6027 2.3197 0.6367 33 1 -1.0204 4.0941 -4.7870 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306233822.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:56 Heat of formation + Delta-G solvation = -65.632115 kcal Electronic energy + Delta-G solvation = -13817.947128 eV Core-core repulsion = 11650.033048 eV Total energy + Delta-G solvation = -2167.914080 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.25089 -34.05117 -32.16877 -31.71656 -30.58633 -28.01729 -25.05263 -22.47894 -22.05303 -20.27757 -18.76608 -16.82034 -15.83587 -14.99929 -14.24175 -13.95819 -13.48509 -13.21604 -12.68072 -12.54985 -12.19425 -11.96647 -11.64263 -11.29962 -11.10942 -10.77954 -10.67302 -10.53859 -10.43232 -10.29771 -9.75996 -9.65069 -9.47742 -9.33928 -8.57248 -8.14967 -6.06768 -4.14598 3.44307 3.50245 3.60238 4.52342 4.75715 5.22809 5.25417 5.36283 5.53274 5.61150 5.73529 5.86447 5.88814 5.93243 6.03951 6.19852 6.21270 6.30586 6.39014 6.48871 6.49931 6.57179 6.68562 6.70880 6.80061 6.90485 7.08160 7.32657 7.68203 8.43034 8.48185 8.94947 9.57585 11.03828 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033739 B = 0.016061 C = 0.013435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.697398 B = 1742.963047 C = 2083.571790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C 0.104 3.896 4 C -0.124 4.124 5 C -0.148 4.148 6 C -0.147 4.147 7 C -0.138 4.138 8 C 0.170 3.830 9 H 0.028 0.972 10 C -0.516 4.516 11 H 0.078 0.922 12 C 0.083 3.917 13 N -0.895 5.895 14 Si 0.900 3.100 15 H -0.274 1.274 16 H -0.266 1.266 17 H -0.300 1.300 18 O -0.373 6.373 19 H 0.081 0.919 20 H 0.039 0.961 21 H 0.048 0.952 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.558 -5.434 8.245 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.064 3.936 4 C -0.162 4.162 5 C -0.205 4.205 6 C -0.185 4.185 7 C -0.176 4.176 8 C 0.115 3.885 9 H 0.045 0.955 10 C -0.553 4.553 11 H 0.096 0.904 12 C -0.121 4.121 13 N -0.533 5.533 14 Si 0.729 3.271 15 H -0.200 1.200 16 H -0.191 1.191 17 H -0.228 1.228 18 O -0.294 6.294 19 H 0.100 0.900 20 H 0.058 0.942 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.541 -5.456 7.864 12.185 hybrid contribution 0.835 0.096 -0.203 0.864 sum 8.375 -5.360 7.661 12.553 Atomic orbital electron populations 1.21859 0.95425 1.00725 1.03035 1.21736 0.96874 0.96011 1.00852 1.21901 0.91976 0.92577 0.87172 1.21846 0.95857 1.00574 0.97905 1.21722 0.99360 1.00155 0.99288 1.23158 0.98607 0.99197 0.97535 1.23263 0.97349 0.99322 0.97626 1.21037 0.90523 0.85094 0.91815 0.95476 1.21042 0.92359 1.48628 0.93268 0.90414 1.25044 0.97366 0.92874 0.96827 1.69937 1.30911 1.47716 1.04732 0.86426 0.85038 0.77940 0.77726 1.19978 1.19109 1.22803 1.88566 1.70148 1.42395 1.28259 0.89975 0.94199 0.93317 0.91823 0.92760 0.92207 0.92297 0.91687 0.93836 0.92995 0.91511 0.91884 0.91991 0.90561 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.34 37.16 0.31 -2.37 16 2 C -0.12 -1.96 4.73 -26.73 -0.13 -2.09 16 3 C 0.10 1.92 0.74 -89.89 -0.07 1.85 16 4 C -0.12 -2.01 5.08 -26.73 -0.14 -2.15 16 5 C -0.15 -2.36 9.32 37.15 0.35 -2.02 16 6 C -0.15 -2.49 5.55 -24.72 -0.14 -2.63 16 7 C -0.14 -2.74 5.93 -24.42 -0.14 -2.89 16 8 C 0.17 4.13 2.67 -26.86 -0.07 4.06 16 9 H 0.03 0.69 7.18 -51.93 -0.37 0.32 16 10 C -0.52 -14.70 9.38 -34.44 -0.32 -15.03 16 11 H 0.08 2.36 8.01 -52.48 -0.42 1.94 16 12 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 13 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 14 Si 0.90 23.43 26.38 -169.99 -4.48 18.94 16 15 H -0.27 -7.18 7.11 56.52 0.40 -6.77 16 16 H -0.27 -6.76 6.52 56.52 0.37 -6.39 16 17 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 18 O -0.37 -8.72 6.88 -35.23 -0.24 -8.96 16 19 H 0.08 1.76 7.34 -51.93 -0.38 1.38 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.79 6.07 -51.93 -0.31 0.48 16 22 H 0.06 1.09 6.63 -51.92 -0.34 0.74 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 1.23 7.56 -51.93 -0.39 0.83 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.76 6.81 -51.93 -0.35 0.40 16 29 H 0.07 0.99 7.31 -51.93 -0.38 0.61 16 30 H 0.06 0.99 7.85 -51.93 -0.41 0.58 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.54 6.01 -51.93 -0.31 1.23 16 33 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 LS Contribution 253.09 15.07 3.81 3.81 Total: -1.00 -30.27 253.09 -5.97 -36.24 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -5.38 Total: -2.21 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -0.45 Total: -20.91 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.77 Total: -26.91 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.24 Total: -8.96 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -4.48 Total: 18.94 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.27 -5.97 -36.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233822.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.392 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds