Wall clock time and date at job start Mon Mar 30 2020 01:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47213 * 2 1 4 4 C 1.53001 * 109.89559 * 179.67884 * 3 2 1 5 5 C 1.52994 * 109.47265 * 59.69225 * 4 3 2 6 6 C 1.54381 * 109.83119 * 58.74680 * 3 2 1 7 7 C 1.55417 * 102.30880 * 261.77182 * 6 3 2 8 8 C 1.54949 * 100.89136 * 325.99130 * 7 6 3 9 9 H 1.09000 * 110.30321 * 277.35565 * 8 7 6 10 10 C 1.50696 * 110.30858 * 155.29016 * 8 7 6 11 11 H 1.08006 * 119.99962 * 1.38480 * 10 8 7 12 12 C 1.37879 * 120.00097 * 181.38787 * 10 8 7 13 13 N 1.31514 * 119.99927 * 179.97438 * 12 10 8 14 14 Si 1.86798 * 119.99608 * 359.97438 * 12 10 8 15 15 H 1.48499 * 109.47246 * 90.00522 * 14 12 10 16 16 H 1.48497 * 109.47292 * 329.99800 * 14 12 10 17 17 H 1.48511 * 109.46759 * 210.00045 * 14 12 10 18 18 O 1.43241 * 109.83030 * 300.61425 * 3 2 1 19 19 H 1.08999 * 109.47478 * 53.58675 * 1 2 3 20 20 H 1.08997 * 109.47405 * 173.58993 * 1 2 3 21 21 H 1.09001 * 109.47130 * 293.59020 * 1 2 3 22 22 H 1.09008 * 109.46888 * 240.00391 * 2 1 3 23 23 H 1.08994 * 109.47576 * 120.00189 * 2 1 3 24 24 H 1.09003 * 109.46586 * 179.68995 * 4 3 2 25 25 H 1.08995 * 109.47377 * 299.68950 * 4 3 2 26 26 H 1.09003 * 109.47485 * 53.85125 * 5 4 3 27 27 H 1.08997 * 109.47515 * 173.84637 * 5 4 3 28 28 H 1.09000 * 109.47245 * 293.85034 * 5 4 3 29 29 H 1.09003 * 110.84248 * 20.03139 * 6 3 2 30 30 H 1.08996 * 110.84812 * 143.44805 * 6 3 2 31 31 H 1.08995 * 111.21252 * 208.05819 * 7 6 3 32 32 H 1.09004 * 111.08441 * 83.86027 * 7 6 3 33 33 H 0.97009 * 119.99718 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4538 0.0081 5 6 4.0919 0.7274 -1.2331 6 6 1.5042 2.1875 1.2415 7 6 0.2822 2.9556 0.6652 8 6 0.7857 3.2762 -0.7647 9 1 1.4133 4.1674 -0.7537 10 6 -0.3808 3.4705 -1.6986 11 1 -1.3910 3.4005 -1.3228 12 6 -0.1587 3.7376 -3.0329 13 7 -1.1768 3.9066 -3.8481 14 14 1.5884 3.8593 -3.6827 15 1 2.0444 2.5190 -4.1309 16 1 2.4839 4.3523 -2.6056 17 1 1.6258 4.8035 -4.8284 18 8 1.5550 2.1294 -1.1597 19 1 -0.3634 0.6100 -0.8270 20 1 -0.3634 -1.0212 -0.1147 21 1 -0.3633 0.4113 0.9418 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 3.9256 2.4842 0.0025 25 1 3.9323 0.9492 0.9036 26 1 3.6430 1.1639 -2.1253 27 1 5.1759 0.8294 -1.2849 28 1 3.8288 -0.3287 -1.1736 29 1 1.1919 1.4825 2.0120 30 1 2.2509 2.8795 1.6309 31 1 0.0894 3.8689 1.2279 32 1 -0.6027 2.3197 0.6367 33 1 -1.0204 4.0941 -4.7870 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306233822.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:56 Heat of formation + Delta-G solvation = -84.648924 kcal Electronic energy + Delta-G solvation = -13818.771759 eV Core-core repulsion = 11650.033048 eV Total energy + Delta-G solvation = -2168.738711 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.80766 -35.71651 -34.24965 -33.16184 -32.06866 -29.78323 -26.75508 -23.91836 -23.55945 -21.99743 -20.25469 -18.95530 -17.40478 -16.83411 -15.91352 -15.32240 -15.12158 -14.74734 -14.56323 -14.11543 -13.99668 -13.42905 -12.95807 -12.83300 -12.62971 -12.55916 -12.34032 -12.21296 -11.86112 -11.73654 -11.68069 -11.21671 -11.15916 -10.98186 -10.81138 -9.90607 -8.34765 -6.45051 1.32711 1.40612 1.50049 2.36487 2.88910 3.48151 3.84934 3.95341 4.11733 4.26643 4.37537 4.48349 4.51197 4.59140 4.67441 4.78766 4.88465 4.97635 5.01982 5.06555 5.12642 5.18920 5.29200 5.35501 5.38298 5.53664 5.57224 5.59545 5.68606 6.22793 6.56187 6.84511 7.31018 8.79849 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033739 B = 0.016061 C = 0.013435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.697398 B = 1742.963047 C = 2083.571790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.086 3.914 4 C -0.121 4.121 5 C -0.148 4.148 6 C -0.134 4.134 7 C -0.136 4.136 8 C 0.170 3.830 9 H 0.019 0.981 10 C -0.519 4.519 11 H 0.042 0.958 12 C 0.029 3.971 13 N -0.941 5.941 14 Si 0.960 3.040 15 H -0.279 1.279 16 H -0.255 1.255 17 H -0.294 1.294 18 O -0.398 6.398 19 H 0.031 0.969 20 H 0.057 0.943 21 H 0.060 0.940 22 H 0.055 0.945 23 H 0.093 0.907 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.026 0.974 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.866 -6.531 10.336 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.047 3.953 4 C -0.159 4.159 5 C -0.205 4.205 6 C -0.171 4.171 7 C -0.174 4.174 8 C 0.114 3.886 9 H 0.037 0.963 10 C -0.557 4.557 11 H 0.061 0.939 12 C -0.171 4.171 13 N -0.581 5.581 14 Si 0.787 3.213 15 H -0.205 1.205 16 H -0.179 1.179 17 H -0.221 1.221 18 O -0.319 6.319 19 H 0.050 0.950 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.111 0.889 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.856 -6.555 9.974 15.479 hybrid contribution 0.061 0.374 -0.793 0.879 sum 9.917 -6.181 9.180 14.860 Atomic orbital electron populations 1.21777 0.96461 1.00859 1.01511 1.21766 0.95849 0.95227 1.02356 1.22360 0.93735 0.93105 0.86128 1.21856 0.93808 1.00753 0.99476 1.21713 1.00566 1.00585 0.97618 1.23144 0.97119 0.99501 0.97366 1.23180 0.98475 1.00348 0.95366 1.20814 0.89115 0.85476 0.93180 0.96295 1.21345 0.92680 1.47556 0.94075 0.93933 1.25832 1.00895 0.93017 0.97316 1.70054 1.32923 1.49956 1.05196 0.85479 0.80771 0.77629 0.77436 1.20467 1.17934 1.22114 1.88464 1.70199 1.42153 1.31077 0.94987 0.92418 0.92148 0.92584 0.88860 0.92911 0.88594 0.95453 0.91609 0.91744 0.88501 0.90066 0.90727 0.91567 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 8.34 71.98 0.60 -4.37 16 2 C -0.11 -3.46 4.73 30.59 0.14 -3.31 16 3 C 0.09 2.91 0.74 -10.32 -0.01 2.91 16 4 C -0.12 -3.45 5.08 30.59 0.16 -3.29 16 5 C -0.15 -4.28 9.32 71.98 0.67 -3.61 16 6 C -0.13 -4.00 5.55 31.89 0.18 -3.83 16 7 C -0.14 -5.22 5.93 32.09 0.19 -5.03 16 8 C 0.17 8.22 2.67 30.51 0.08 8.30 16 9 H 0.02 0.96 7.18 -2.39 -0.02 0.94 16 10 C -0.52 -30.61 9.38 25.60 0.24 -30.37 16 11 H 0.04 2.72 8.01 -2.91 -0.02 2.70 16 12 C 0.03 1.74 5.47 84.66 0.46 2.20 16 13 N -0.94 -60.37 13.96 21.45 0.30 -60.07 16 14 Si 0.96 49.41 26.38 68.60 1.81 51.22 16 15 H -0.28 -14.42 7.11 99.48 0.71 -13.71 16 16 H -0.26 -12.51 6.52 99.48 0.65 -11.86 16 17 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 18 O -0.40 -18.31 6.88 -148.98 -1.03 -19.34 16 19 H 0.03 1.37 7.34 -2.39 -0.02 1.36 16 20 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.06 1.83 6.07 -2.39 -0.01 1.82 16 22 H 0.06 1.77 6.63 -2.38 -0.02 1.76 16 23 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.03 0.98 7.56 -2.39 -0.02 0.96 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.67 6.81 -2.39 -0.02 1.66 16 29 H 0.10 2.35 7.31 -2.39 -0.02 2.33 16 30 H 0.08 2.17 7.85 -2.39 -0.02 2.15 16 31 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.07 2.65 6.01 -2.39 -0.01 2.64 16 33 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 Total: -1.00 -67.80 253.09 4.80 -63.00 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 1.00 Total: 5.60 kcal Atomic # 6 Polarization: -43.12 SS G_CDS: 2.72 Total: -40.41 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.30 Total: -60.07 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -1.03 Total: -19.34 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 1.81 Total: 51.22 kcal Total: -67.80 4.80 -63.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233822.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.652 kcal (2) G-P(sol) polarization free energy of solvation -67.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds