Wall clock time and date at job start Mon Mar 30 2020 01:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47253 * 2 1 4 4 C 1.53001 * 109.82537 * 180.51079 * 3 2 1 5 5 C 1.53003 * 109.46883 * 299.53858 * 4 3 2 6 6 C 1.54377 * 109.82942 * 301.39645 * 3 2 1 7 7 C 1.55301 * 102.44125 * 98.05540 * 6 3 2 8 8 C 1.55504 * 100.69275 * 34.12598 * 7 6 3 9 9 H 1.09005 * 110.37350 * 82.55781 * 8 7 6 10 10 C 1.50696 * 110.28396 * 204.65496 * 8 7 6 11 11 H 1.07999 * 120.00310 * 357.20588 * 10 8 7 12 12 C 1.37880 * 119.99951 * 177.20681 * 10 8 7 13 13 N 1.31516 * 119.99735 * 180.02562 * 12 10 8 14 14 Si 1.86796 * 120.00097 * 359.97438 * 12 10 8 15 15 H 1.48506 * 109.46601 * 90.00297 * 14 12 10 16 16 H 1.48499 * 109.47443 * 210.00147 * 14 12 10 17 17 H 1.48497 * 109.47191 * 330.00820 * 14 12 10 18 18 O 1.43234 * 109.83006 * 59.52902 * 3 2 1 19 19 H 1.08998 * 109.46995 * 306.73463 * 1 2 3 20 20 H 1.09005 * 109.46793 * 66.73669 * 1 2 3 21 21 H 1.09000 * 109.47197 * 186.73329 * 1 2 3 22 22 H 1.09007 * 109.47251 * 239.99745 * 2 1 3 23 23 H 1.09001 * 109.47310 * 119.99947 * 2 1 3 24 24 H 1.09003 * 109.46875 * 59.53341 * 4 3 2 25 25 H 1.08999 * 109.47274 * 179.54116 * 4 3 2 26 26 H 1.09006 * 109.46971 * 177.12491 * 5 4 3 27 27 H 1.08997 * 109.46789 * 297.12450 * 5 4 3 28 28 H 1.08995 * 109.47573 * 57.12390 * 5 4 3 29 29 H 1.09005 * 110.84914 * 216.34843 * 6 3 2 30 30 H 1.09008 * 110.85070 * 339.76251 * 6 3 2 31 31 H 1.08992 * 111.13180 * 152.15365 * 7 6 3 32 32 H 1.09008 * 111.12547 * 276.31856 * 7 6 3 33 33 H 0.97003 * 119.99962 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4519 -0.0128 5 6 4.0948 0.7402 1.2357 6 6 1.5013 2.1884 -1.2396 7 6 0.2782 2.9533 -0.6645 8 6 0.7875 3.2756 0.7690 9 1 1.4150 4.1667 0.7574 10 6 -0.3769 3.4690 1.7059 11 1 -1.3876 3.4208 1.3284 12 6 -0.1519 3.7076 3.0451 13 7 -1.1682 3.8760 3.8628 14 14 1.5961 3.7904 3.6983 15 1 2.0875 5.1897 3.6213 16 1 1.6186 3.3349 5.1116 17 1 2.4719 2.9126 2.8813 18 8 1.5578 2.1283 1.1613 19 1 -0.3633 0.6146 0.8236 20 1 -0.3633 0.4059 -0.9442 21 1 -0.3633 -1.0206 0.1205 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 3.9290 0.9357 -0.9032 25 1 3.9269 2.4818 -0.0210 26 1 5.1836 0.7019 1.2015 27 1 3.7782 1.2854 2.1248 28 1 3.6965 -0.2738 1.2704 29 1 2.2458 2.8834 -1.6281 30 1 1.1905 1.4842 -2.0115 31 1 0.0830 3.8643 -1.2301 32 1 -0.6052 2.3153 -0.6338 33 1 -1.0099 4.0435 4.8051 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306233823.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:58 Heat of formation + Delta-G solvation = -63.269163 kcal Electronic energy + Delta-G solvation = -13832.107290 eV Core-core repulsion = 11664.295676 eV Total energy + Delta-G solvation = -2167.811615 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.21976 -34.02234 -32.14054 -31.70002 -30.55907 -27.99157 -25.02834 -22.47032 -22.02621 -20.25563 -18.76153 -16.75891 -15.81763 -15.04111 -14.18567 -13.98546 -13.49751 -13.18646 -12.67190 -12.54023 -12.14933 -11.94996 -11.62487 -11.27406 -11.12275 -10.85763 -10.69144 -10.51457 -10.39035 -10.04894 -9.74829 -9.69428 -9.42913 -9.24900 -8.48931 -8.07807 -6.04946 -4.12346 3.42890 3.48590 3.74437 4.59080 4.79381 5.24765 5.27051 5.38725 5.54778 5.63183 5.75507 5.87314 5.90677 5.94992 6.07013 6.20786 6.23044 6.31900 6.39715 6.48607 6.51459 6.58091 6.71738 6.72064 6.81448 6.92370 7.08978 7.32868 7.69836 8.45566 8.50125 8.97263 9.60328 11.05698 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033660 B = 0.016169 C = 0.013499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.646846 B = 1731.261528 C = 2073.715631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C 0.099 3.901 4 C -0.122 4.122 5 C -0.149 4.149 6 C -0.147 4.147 7 C -0.138 4.138 8 C 0.173 3.827 9 H 0.023 0.977 10 C -0.520 4.520 11 H 0.076 0.924 12 C 0.083 3.917 13 N -0.896 5.896 14 Si 0.865 3.135 15 H -0.287 1.287 16 H -0.294 1.294 17 H -0.217 1.217 18 O -0.362 6.362 19 H 0.082 0.918 20 H 0.047 0.953 21 H 0.038 0.962 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.759 -5.559 -8.252 12.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.059 3.941 4 C -0.160 4.160 5 C -0.206 4.206 6 C -0.185 4.185 7 C -0.176 4.176 8 C 0.118 3.882 9 H 0.040 0.960 10 C -0.557 4.557 11 H 0.094 0.906 12 C -0.120 4.120 13 N -0.533 5.533 14 Si 0.692 3.308 15 H -0.214 1.214 16 H -0.220 1.220 17 H -0.140 1.140 18 O -0.283 6.283 19 H 0.101 0.899 20 H 0.066 0.934 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.747 -5.595 -7.873 12.382 hybrid contribution 0.740 0.182 0.256 0.804 sum 8.487 -5.413 -7.617 12.624 Atomic orbital electron populations 1.21861 0.95461 1.00714 1.02990 1.21748 0.96825 0.96161 1.00777 1.21931 0.92033 0.92637 0.87491 1.21820 0.95892 1.00499 0.97792 1.21763 0.98933 1.00662 0.99244 1.23139 0.98574 0.99172 0.97600 1.23333 0.97334 0.99296 0.97611 1.20994 0.90386 0.85094 0.91733 0.95971 1.21029 0.92445 1.49425 0.92779 0.90584 1.25028 0.97411 0.92787 0.96805 1.69935 1.31117 1.47859 1.04423 0.87066 0.86672 0.78770 0.78275 1.21405 1.22017 1.13954 1.88863 1.70053 1.42171 1.27200 0.89947 0.93367 0.94249 0.92878 0.91823 0.92455 0.92296 0.94025 0.91641 0.92848 0.91956 0.91632 0.92075 0.90574 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.33 37.16 0.31 -2.36 16 2 C -0.12 -1.96 4.74 -26.73 -0.13 -2.09 16 3 C 0.10 1.81 0.74 -89.90 -0.07 1.75 16 4 C -0.12 -1.97 5.08 -26.73 -0.14 -2.10 16 5 C -0.15 -2.36 9.48 37.16 0.35 -2.01 16 6 C -0.15 -2.48 5.53 -24.79 -0.14 -2.62 16 7 C -0.14 -2.73 5.95 -24.18 -0.14 -2.88 16 8 C 0.17 4.14 2.69 -26.55 -0.07 4.07 16 9 H 0.02 0.55 7.63 -51.93 -0.40 0.15 16 10 C -0.52 -14.75 9.39 -34.44 -0.32 -15.08 16 11 H 0.08 2.31 8.01 -52.49 -0.42 1.89 16 12 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 13 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 14 Si 0.87 22.11 27.07 -169.99 -4.60 17.51 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 16 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 17 H -0.22 -5.32 4.70 56.52 0.27 -5.05 16 18 O -0.36 -8.33 6.01 -35.23 -0.21 -8.54 16 19 H 0.08 1.76 7.30 -51.93 -0.38 1.38 16 20 H 0.05 0.79 6.09 -51.93 -0.32 0.47 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.06 1.08 6.44 -51.93 -0.33 0.75 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.21 7.12 -51.93 -0.37 0.84 16 28 H 0.05 0.80 6.33 -51.93 -0.33 0.47 16 29 H 0.06 0.97 7.85 -51.93 -0.41 0.57 16 30 H 0.06 0.98 7.32 -51.92 -0.38 0.60 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.54 6.00 -51.92 -0.31 1.23 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 250.62 15.07 3.78 3.78 Total: -1.00 -30.18 250.62 -6.16 -36.34 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.45 Total: -1.13 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -0.44 Total: -20.95 kcal Atomic # 7 Polarization: -27.78 SS G_CDS: 0.77 Total: -27.00 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.21 Total: -8.54 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.60 Total: 17.51 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.18 -6.16 -36.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233823.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.934 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds