Wall clock time and date at job start Mon Mar 30 2020 01:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47253 * 2 1 4 4 C 1.53001 * 109.82537 * 180.51079 * 3 2 1 5 5 C 1.53003 * 109.46883 * 299.53858 * 4 3 2 6 6 C 1.54377 * 109.82942 * 301.39645 * 3 2 1 7 7 C 1.55301 * 102.44125 * 98.05540 * 6 3 2 8 8 C 1.55504 * 100.69275 * 34.12598 * 7 6 3 9 9 H 1.09005 * 110.37350 * 82.55781 * 8 7 6 10 10 C 1.50696 * 110.28396 * 204.65496 * 8 7 6 11 11 H 1.07999 * 120.00310 * 357.20588 * 10 8 7 12 12 C 1.37880 * 119.99951 * 177.20681 * 10 8 7 13 13 N 1.31516 * 119.99735 * 180.02562 * 12 10 8 14 14 Si 1.86796 * 120.00097 * 359.97438 * 12 10 8 15 15 H 1.48506 * 109.46601 * 90.00297 * 14 12 10 16 16 H 1.48499 * 109.47443 * 210.00147 * 14 12 10 17 17 H 1.48497 * 109.47191 * 330.00820 * 14 12 10 18 18 O 1.43234 * 109.83006 * 59.52902 * 3 2 1 19 19 H 1.08998 * 109.46995 * 306.73463 * 1 2 3 20 20 H 1.09005 * 109.46793 * 66.73669 * 1 2 3 21 21 H 1.09000 * 109.47197 * 186.73329 * 1 2 3 22 22 H 1.09007 * 109.47251 * 239.99745 * 2 1 3 23 23 H 1.09001 * 109.47310 * 119.99947 * 2 1 3 24 24 H 1.09003 * 109.46875 * 59.53341 * 4 3 2 25 25 H 1.08999 * 109.47274 * 179.54116 * 4 3 2 26 26 H 1.09006 * 109.46971 * 177.12491 * 5 4 3 27 27 H 1.08997 * 109.46789 * 297.12450 * 5 4 3 28 28 H 1.08995 * 109.47573 * 57.12390 * 5 4 3 29 29 H 1.09005 * 110.84914 * 216.34843 * 6 3 2 30 30 H 1.09008 * 110.85070 * 339.76251 * 6 3 2 31 31 H 1.08992 * 111.13180 * 152.15365 * 7 6 3 32 32 H 1.09008 * 111.12547 * 276.31856 * 7 6 3 33 33 H 0.97003 * 119.99962 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4519 -0.0128 5 6 4.0948 0.7402 1.2357 6 6 1.5013 2.1884 -1.2396 7 6 0.2782 2.9533 -0.6645 8 6 0.7875 3.2756 0.7690 9 1 1.4150 4.1667 0.7574 10 6 -0.3769 3.4690 1.7059 11 1 -1.3876 3.4208 1.3284 12 6 -0.1519 3.7076 3.0451 13 7 -1.1682 3.8760 3.8628 14 14 1.5961 3.7904 3.6983 15 1 2.0875 5.1897 3.6213 16 1 1.6186 3.3349 5.1116 17 1 2.4719 2.9126 2.8813 18 8 1.5578 2.1283 1.1613 19 1 -0.3633 0.6146 0.8236 20 1 -0.3633 0.4059 -0.9442 21 1 -0.3633 -1.0206 0.1205 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 3.9290 0.9357 -0.9032 25 1 3.9269 2.4818 -0.0210 26 1 5.1836 0.7019 1.2015 27 1 3.7782 1.2854 2.1248 28 1 3.6965 -0.2738 1.2704 29 1 2.2458 2.8834 -1.6281 30 1 1.1905 1.4842 -2.0115 31 1 0.0830 3.8643 -1.2301 32 1 -0.6052 2.3153 -0.6338 33 1 -1.0099 4.0435 4.8051 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306233823.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:57 Heat of formation + Delta-G solvation = -82.013099 kcal Electronic energy + Delta-G solvation = -13832.920089 eV Core-core repulsion = 11664.295676 eV Total energy + Delta-G solvation = -2168.624413 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.76219 -35.67593 -34.21163 -33.13113 -32.02957 -29.75236 -26.72064 -23.89701 -23.52515 -21.96477 -20.24101 -18.87817 -17.36936 -16.85312 -15.84485 -15.35634 -15.10555 -14.69473 -14.57069 -14.04211 -13.96650 -13.38537 -12.93814 -12.82349 -12.67352 -12.52763 -12.27399 -12.14497 -11.80944 -11.67385 -11.55136 -11.22514 -11.09965 -10.94878 -10.67110 -9.81147 -8.31933 -6.42430 1.36827 1.39717 1.70570 2.44978 2.96462 3.49184 3.87725 3.98376 4.15257 4.28229 4.39380 4.50459 4.54543 4.62084 4.70081 4.81931 4.89937 4.99231 5.03967 5.08815 5.15005 5.20819 5.33087 5.37128 5.41840 5.56704 5.59977 5.61950 5.70567 6.25089 6.58695 6.88505 7.34592 8.82433 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033660 B = 0.016169 C = 0.013499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.646846 B = 1731.261528 C = 2073.715631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.082 3.918 4 C -0.120 4.120 5 C -0.149 4.149 6 C -0.134 4.134 7 C -0.137 4.137 8 C 0.173 3.827 9 H 0.019 0.981 10 C -0.522 4.522 11 H 0.037 0.963 12 C 0.025 3.975 13 N -0.945 5.945 14 Si 0.929 3.071 15 H -0.281 1.281 16 H -0.298 1.298 17 H -0.201 1.201 18 O -0.385 6.385 19 H 0.032 0.968 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.090 0.910 23 H 0.057 0.943 24 H 0.092 0.908 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.262 -6.715 -10.319 16.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.043 3.957 4 C -0.157 4.157 5 C -0.206 4.206 6 C -0.171 4.171 7 C -0.174 4.174 8 C 0.117 3.883 9 H 0.037 0.963 10 C -0.560 4.560 11 H 0.056 0.944 12 C -0.173 4.173 13 N -0.585 5.585 14 Si 0.753 3.247 15 H -0.207 1.207 16 H -0.225 1.225 17 H -0.123 1.123 18 O -0.306 6.306 19 H 0.051 0.949 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.108 0.892 23 H 0.076 0.924 24 H 0.110 0.890 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.258 -6.758 -9.964 15.817 hybrid contribution -0.111 0.491 0.833 0.973 sum 10.147 -6.268 -9.130 15.020 Atomic orbital electron populations 1.21776 0.96546 1.00792 1.01461 1.21775 0.95745 0.95458 1.02272 1.22363 0.93799 0.93096 0.86442 1.21828 0.93793 1.00819 0.99285 1.21752 1.00606 1.00460 0.97757 1.23118 0.97089 0.99474 0.97458 1.23252 0.98419 1.00256 0.95506 1.20779 0.89005 0.85634 0.92880 0.96327 1.21337 0.92678 1.48301 0.93651 0.94427 1.25895 1.01328 0.92809 0.97283 1.70071 1.33346 1.50266 1.04813 0.86094 0.82117 0.79159 0.77324 1.20732 1.22454 1.12317 1.88747 1.70015 1.41927 1.29945 0.94889 0.92306 0.92528 0.89150 0.92449 0.88961 0.92778 0.91585 0.94958 0.92160 0.90094 0.88802 0.90874 0.91731 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 8.33 71.98 0.60 -4.35 16 2 C -0.12 -3.45 4.74 30.59 0.15 -3.30 16 3 C 0.08 2.75 0.74 -10.33 -0.01 2.74 16 4 C -0.12 -3.34 5.08 30.60 0.16 -3.18 16 5 C -0.15 -4.22 9.48 71.98 0.68 -3.53 16 6 C -0.13 -3.98 5.53 31.85 0.18 -3.81 16 7 C -0.14 -5.22 5.95 32.25 0.19 -5.03 16 8 C 0.17 8.23 2.69 30.71 0.08 8.31 16 9 H 0.02 0.92 7.63 -2.38 -0.02 0.90 16 10 C -0.52 -30.69 9.39 25.60 0.24 -30.44 16 11 H 0.04 2.42 8.01 -2.91 -0.02 2.40 16 12 C 0.03 1.54 5.47 84.66 0.46 2.01 16 13 N -0.94 -60.98 13.96 21.45 0.30 -60.68 16 14 Si 0.93 46.72 27.07 68.60 1.86 48.58 16 15 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 16 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 17 H -0.20 -9.54 4.70 99.48 0.47 -9.08 16 18 O -0.39 -17.28 6.01 -148.98 -0.90 -18.18 16 19 H 0.03 1.41 7.30 -2.39 -0.02 1.39 16 20 H 0.06 1.79 6.09 -2.38 -0.01 1.78 16 21 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 23 H 0.06 1.79 6.44 -2.39 -0.02 1.77 16 24 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.03 1.11 7.12 -2.39 -0.02 1.09 16 28 H 0.06 1.60 6.33 -2.39 -0.02 1.59 16 29 H 0.08 2.14 7.85 -2.38 -0.02 2.12 16 30 H 0.09 2.30 7.32 -2.38 -0.02 2.28 16 31 H 0.07 2.57 8.14 -2.39 -0.02 2.56 16 32 H 0.06 2.59 6.00 -2.38 -0.01 2.58 16 33 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -67.66 250.62 4.81 -62.85 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 0.82 Total: 8.02 kcal Atomic # 6 Polarization: -43.32 SS G_CDS: 2.73 Total: -40.59 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: 0.30 Total: -60.68 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.90 Total: -18.18 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.86 Total: 48.58 kcal Total: -67.66 4.81 -62.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233823.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.165 kcal (2) G-P(sol) polarization free energy of solvation -67.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds