Wall clock time and date at job start Mon Mar 30 2020 01:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47450 * 2 1 4 4 C 1.52993 * 109.47559 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.86670 * 59.55387 * 4 3 2 6 6 C 1.54099 * 109.87889 * 180.71283 * 4 3 2 7 7 C 1.54815 * 104.18723 * 121.45757 * 6 4 3 8 8 C 1.55002 * 102.09032 * 20.88011 * 7 6 4 9 9 H 1.09002 * 110.61904 * 81.47860 * 8 7 6 10 10 C 1.50697 * 110.75204 * 204.41231 * 8 7 6 11 11 H 1.08010 * 119.99834 * 357.73105 * 10 8 7 12 12 C 1.37877 * 120.00190 * 177.72871 * 10 8 7 13 13 N 1.31515 * 119.99633 * 359.97438 * 12 10 8 14 14 Si 1.86797 * 120.00065 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47664 * 59.99925 * 14 12 10 16 16 H 1.48501 * 109.47125 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47138 * 299.99776 * 14 12 10 18 18 O 1.43744 * 109.88079 * 298.54747 * 4 3 2 19 19 H 1.08996 * 109.46979 * 299.99642 * 1 2 3 20 20 H 1.08996 * 109.46821 * 60.00084 * 1 2 3 21 21 H 1.09002 * 109.46832 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47381 * 239.99840 * 2 1 3 23 23 H 1.09004 * 109.47199 * 120.00390 * 2 1 3 24 24 H 1.09004 * 109.46960 * 59.99582 * 3 2 1 25 25 H 1.08998 * 109.46568 * 300.00374 * 3 2 1 26 26 H 1.08999 * 109.47081 * 300.44319 * 5 4 3 27 27 H 1.08997 * 109.47338 * 60.44714 * 5 4 3 28 28 H 1.09004 * 109.47005 * 180.44910 * 5 4 3 29 29 H 1.08999 * 110.48774 * 240.13053 * 6 4 3 30 30 H 1.08995 * 110.48946 * 2.78042 * 6 4 3 31 31 H 1.08994 * 110.90611 * 262.68885 * 7 6 4 32 32 H 1.08995 * 110.90822 * 139.07665 * 7 6 4 33 33 H 0.96998 * 119.99659 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0905 0.7131 -1.2396 6 6 4.0940 2.8916 0.0187 7 6 4.9591 2.9663 1.3004 8 6 5.2773 1.4726 1.5648 9 1 6.1082 1.1410 0.9420 10 6 5.5837 1.2418 3.0222 11 1 5.5961 2.0746 3.7099 12 6 5.8481 -0.0324 3.4777 13 7 5.8325 -1.0465 2.6404 14 14 6.2272 -0.3186 5.2843 15 1 5.0742 0.1249 6.1084 16 1 6.4743 -1.7645 5.5152 17 1 7.4352 0.4565 5.6654 18 8 4.0583 0.7967 1.1884 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 3.7243 -0.3135 -1.2378 27 1 3.7377 1.2232 -2.1359 28 1 5.1805 0.7100 -1.2286 29 1 4.7023 3.0883 -0.8641 30 1 3.2646 3.5965 0.0765 31 1 4.3932 3.3956 2.1271 32 1 5.8727 3.5328 1.1205 33 1 6.0188 -1.9428 2.9608 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306250812.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:40 Heat of formation + Delta-G solvation = -72.742346 kcal Electronic energy + Delta-G solvation = -13391.812847 eV Core-core repulsion = 11223.590444 eV Total energy + Delta-G solvation = -2168.222403 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.68452 -34.47092 -32.46713 -30.94385 -30.13442 -26.62161 -26.08884 -23.32320 -21.07279 -20.00294 -18.79565 -16.53395 -14.98740 -14.87652 -14.56717 -14.02398 -13.59780 -12.92088 -12.63611 -12.53913 -11.90208 -11.68297 -11.59345 -11.18570 -11.08677 -10.85872 -10.64894 -10.55581 -10.38026 -10.08935 -9.95484 -9.53435 -9.49566 -8.99201 -8.54463 -7.91491 -5.97448 -4.09577 3.34501 3.38820 3.41376 4.45123 5.04119 5.30353 5.45013 5.46797 5.61900 5.71887 5.74921 5.94287 6.00402 6.08657 6.20265 6.23121 6.28690 6.39005 6.45874 6.50519 6.66096 6.74243 6.76363 6.88982 6.94251 7.04376 7.12744 7.59503 7.92951 8.30769 8.68650 9.04435 9.60429 11.10367 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035698 B = 0.011381 C = 0.009895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.165500 B = 2459.648573 C = 2828.983146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.102 4.102 4 C 0.090 3.910 5 C -0.156 4.156 6 C -0.147 4.147 7 C -0.148 4.148 8 C 0.210 3.790 9 H 0.024 0.976 10 C -0.530 4.530 11 H 0.062 0.938 12 C 0.077 3.923 13 N -0.864 5.864 14 Si 0.891 3.109 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.276 1.276 18 O -0.343 6.343 19 H 0.050 0.950 20 H 0.045 0.955 21 H 0.048 0.952 22 H 0.058 0.942 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.792 3.856 -5.800 9.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.140 4.140 4 C 0.049 3.951 5 C -0.213 4.213 6 C -0.184 4.184 7 C -0.186 4.186 8 C 0.155 3.845 9 H 0.042 0.958 10 C -0.567 4.567 11 H 0.080 0.920 12 C -0.128 4.128 13 N -0.500 5.500 14 Si 0.719 3.281 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 O -0.262 6.262 19 H 0.069 0.931 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.864 3.476 -5.717 8.897 hybrid contribution 0.294 -0.024 0.782 0.836 sum -5.570 3.452 -4.936 8.204 Atomic orbital electron populations 1.21790 0.97061 1.00853 1.00970 1.21501 0.94164 0.97362 1.02959 1.21653 0.94620 0.96917 1.00773 1.21897 0.93071 0.91124 0.89013 1.22237 1.01339 1.00915 0.96853 1.22988 0.99399 0.97173 0.98874 1.23195 0.98218 1.01385 0.95793 1.20605 0.84223 0.84238 0.95453 0.95807 1.20969 1.48947 0.93626 0.93205 0.91991 1.25067 0.94025 0.96202 0.97546 1.70029 1.46336 0.99281 1.34340 0.86692 0.78862 0.77090 0.85503 1.20093 1.21205 1.20149 1.89259 1.41521 1.56566 1.38846 0.93098 0.93549 0.93331 0.92372 0.90584 0.92054 0.92668 0.92228 0.93642 0.92770 0.92244 0.92275 0.91928 0.92540 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.12 -2.10 5.45 -26.73 -0.15 -2.25 16 3 C -0.10 -1.79 4.28 -26.73 -0.11 -1.91 16 4 C 0.09 1.83 0.85 -90.05 -0.08 1.75 16 5 C -0.16 -2.91 8.26 37.16 0.31 -2.60 16 6 C -0.15 -2.74 6.28 -25.20 -0.16 -2.90 16 7 C -0.15 -3.20 6.56 -24.72 -0.16 -3.36 16 8 C 0.21 5.55 3.07 -26.83 -0.08 5.47 16 9 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 10 C -0.53 -15.20 8.83 -34.44 -0.30 -15.51 16 11 H 0.06 1.72 7.78 -52.48 -0.41 1.31 16 12 C 0.08 2.22 5.43 -17.82 -0.10 2.13 16 13 N -0.86 -25.95 13.03 55.43 0.72 -25.23 16 14 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 O -0.34 -8.94 9.63 -35.23 -0.34 -9.28 16 19 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.96 6.44 -51.93 -0.33 0.63 16 23 H 0.08 1.55 7.74 -51.93 -0.40 1.15 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 1.12 6.44 -51.93 -0.33 0.79 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.01 7.70 -51.93 -0.40 0.61 16 30 H 0.06 0.99 7.70 -51.93 -0.40 0.59 16 31 H 0.06 1.36 8.05 -51.93 -0.42 0.94 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 265.88 15.07 4.01 4.01 Total: -1.00 -30.15 265.88 -6.73 -36.88 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.64 Total: -2.17 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -0.46 Total: -20.88 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.72 Total: -25.23 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.34 Total: -9.28 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.15 -6.73 -36.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306250812.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.859 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds