Wall clock time and date at job start Mon Mar 30 2020 01:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47349 * 2 1 4 4 C 1.53005 * 109.47472 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.81829 * 305.88375 * 4 3 2 6 6 C 1.54379 * 109.83158 * 184.99921 * 4 3 2 7 7 C 1.55311 * 102.25038 * 219.12711 * 6 4 3 8 8 C 1.54941 * 100.94079 * 34.13173 * 7 6 4 9 9 H 1.08998 * 110.31400 * 82.56923 * 8 7 6 10 10 C 1.50706 * 110.30993 * 204.64015 * 8 7 6 11 11 H 1.08005 * 119.99758 * 0.02562 * 10 8 7 12 12 C 1.37871 * 120.00102 * 180.02562 * 10 8 7 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47483 * 269.99808 * 14 12 10 16 16 H 1.48499 * 109.47134 * 30.00322 * 14 12 10 17 17 H 1.48507 * 109.46904 * 150.00145 * 14 12 10 18 18 O 1.43242 * 109.83027 * 66.85824 * 4 3 2 19 19 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.47045 * 299.99925 * 1 2 3 21 21 H 1.08992 * 109.47058 * 60.00203 * 1 2 3 22 22 H 1.09002 * 109.47081 * 239.99530 * 2 1 3 23 23 H 1.09006 * 109.47578 * 119.99881 * 2 1 3 24 24 H 1.08994 * 109.47495 * 60.00029 * 3 2 1 25 25 H 1.09005 * 109.46626 * 299.99877 * 3 2 1 26 26 H 1.09001 * 109.47088 * 299.11100 * 5 4 3 27 27 H 1.08997 * 109.47339 * 59.10991 * 5 4 3 28 28 H 1.08997 * 109.46576 * 179.11191 * 5 4 3 29 29 H 1.08996 * 110.84629 * 100.93405 * 6 4 3 30 30 H 1.09004 * 111.02153 * 337.39181 * 6 4 3 31 31 H 1.09003 * 111.12031 * 276.21499 * 7 6 4 32 32 H 1.08999 * 111.12366 * 152.04833 * 7 6 4 33 33 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0893 0.5986 1.1653 6 6 4.0938 2.8892 0.1259 7 6 5.3128 2.8837 -0.8365 8 6 4.8140 1.9141 -1.9373 9 1 4.1805 2.4433 -2.6491 10 6 5.9838 1.2831 -2.6478 11 1 6.9927 1.5360 -2.3568 12 6 5.7661 0.3831 -3.6693 13 7 4.5376 0.0756 -4.0240 14 14 7.2160 -0.3983 -4.5504 15 1 7.6036 0.4447 -5.7099 16 1 8.3630 -0.5094 -3.6138 17 1 6.8341 -1.7516 -5.0281 18 8 4.0555 0.9131 -1.2400 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6768 1.9563 0.8899 25 1 1.6767 1.9563 -0.8901 26 1 3.7426 1.0262 2.1060 27 1 3.7162 -0.4211 1.0703 28 1 5.1792 0.5896 1.1501 29 1 4.4076 3.1001 1.1482 30 1 3.3427 3.6072 -0.2035 31 1 6.2020 2.4927 -0.3419 32 1 5.4968 3.8782 -1.2430 33 1 3.7847 0.4817 -3.5667 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306250813.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:41 Heat of formation + Delta-G solvation = -97.409816 kcal Electronic energy + Delta-G solvation = -13439.044753 eV Core-core repulsion = 11269.752689 eV Total energy + Delta-G solvation = -2169.292064 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.59566 -36.28627 -34.60250 -32.92494 -31.75685 -28.08830 -27.55246 -25.04639 -23.00396 -21.94302 -20.44673 -19.08526 -17.26691 -16.48878 -15.71225 -15.58161 -15.46657 -15.05698 -14.21172 -13.99554 -13.88821 -13.34882 -12.98067 -12.78447 -12.62509 -12.56654 -12.39407 -12.27133 -12.08635 -11.93885 -11.49098 -11.39051 -11.10266 -10.74160 -10.63266 -9.88755 -8.65365 -6.43044 1.50273 1.60550 1.77955 2.55808 3.03938 3.46498 3.79965 3.83867 4.10185 4.14147 4.25376 4.30927 4.49070 4.58673 4.63550 4.73723 4.80571 4.85345 4.90307 4.93001 5.05423 5.08890 5.12088 5.26689 5.33171 5.43895 5.51715 5.56422 5.98115 6.10959 6.54838 6.84284 7.50544 8.75278 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037893 B = 0.011332 C = 0.009702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.754607 B = 2470.349027 C = 2885.370747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.111 4.111 4 C 0.078 3.922 5 C -0.142 4.142 6 C -0.136 4.136 7 C -0.133 4.133 8 C 0.184 3.816 9 H -0.016 1.016 10 C -0.626 4.626 11 H 0.053 0.947 12 C -0.023 4.023 13 N -0.921 5.921 14 Si 1.119 2.881 15 H -0.268 1.268 16 H -0.271 1.271 17 H -0.284 1.284 18 O -0.398 6.398 19 H 0.058 0.942 20 H 0.072 0.928 21 H 0.044 0.956 22 H 0.027 0.973 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.041 0.959 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.040 0.960 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 3.139 10.222 11.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C -0.148 4.148 4 C 0.039 3.961 5 C -0.199 4.199 6 C -0.173 4.173 7 C -0.171 4.171 8 C 0.129 3.871 9 H 0.002 0.998 10 C -0.663 4.663 11 H 0.071 0.929 12 C -0.224 4.224 13 N -0.556 5.556 14 Si 0.940 3.060 15 H -0.193 1.193 16 H -0.196 1.196 17 H -0.210 1.210 18 O -0.319 6.319 19 H 0.077 0.923 20 H 0.091 0.909 21 H 0.063 0.937 22 H 0.046 0.954 23 H 0.090 0.910 24 H 0.112 0.888 25 H 0.060 0.940 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.369 1.900 8.971 9.770 hybrid contribution -0.443 1.232 0.872 1.573 sum -3.812 3.132 9.844 11.011 Atomic orbital electron populations 1.21734 0.94409 1.01975 1.01985 1.21481 0.96665 0.96626 1.01076 1.21871 0.93765 0.97487 1.01722 1.22347 0.94000 0.93267 0.86533 1.22040 1.00402 1.00164 0.97316 1.23144 0.97177 0.96126 1.00899 1.23064 0.98181 0.99301 0.96564 1.20519 0.89344 0.86938 0.90342 0.99798 1.22447 0.92948 1.30782 1.20124 0.92911 1.27418 1.03467 0.95154 0.96352 1.70774 0.99483 1.42618 1.42767 0.82939 0.71552 0.75937 0.75554 1.19326 1.19569 1.20955 1.88669 1.71010 1.40013 1.32211 0.92268 0.90928 0.93688 0.95381 0.90999 0.88844 0.94039 0.89178 0.92838 0.94056 0.88280 0.90613 0.92001 0.90870 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.12 -3.96 5.34 30.59 0.16 -3.80 16 3 C -0.11 -3.68 4.40 30.60 0.13 -3.55 16 4 C 0.08 3.02 0.94 -10.32 -0.01 3.01 16 5 C -0.14 -4.76 8.24 71.98 0.59 -4.16 16 6 C -0.14 -4.65 6.08 31.86 0.19 -4.45 16 7 C -0.13 -5.64 6.53 32.05 0.21 -5.43 16 8 C 0.18 9.98 2.78 30.51 0.08 10.06 16 9 H -0.02 -0.92 7.95 -2.39 -0.02 -0.94 16 10 C -0.63 -37.30 8.79 25.60 0.23 -37.07 16 11 H 0.05 3.06 7.76 -2.91 -0.02 3.04 16 12 C -0.02 -1.39 5.43 84.65 0.46 -0.93 16 13 N -0.92 -59.60 13.58 21.45 0.29 -59.31 16 14 Si 1.12 52.18 29.90 68.60 2.05 54.23 16 15 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 18 O -0.40 -21.03 9.08 -148.98 -1.35 -22.38 16 19 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 20 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 21 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.03 1.15 7.90 -2.39 -0.02 1.13 16 23 H 0.07 2.14 6.35 -2.38 -0.02 2.12 16 24 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.04 1.51 8.14 -2.38 -0.02 1.50 16 26 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.05 1.83 6.32 -2.39 -0.02 1.82 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.10 2.71 7.82 -2.39 -0.02 2.69 16 30 H 0.08 2.39 7.86 -2.38 -0.02 2.37 16 31 H 0.06 2.63 8.04 -2.39 -0.02 2.61 16 32 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.26 17.49 6.65 -92.71 -0.62 16.87 16 Total: -1.00 -69.83 264.10 4.96 -64.87 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.20 Total: 11.92 kcal Atomic # 6 Polarization: -52.10 SS G_CDS: 2.77 Total: -49.33 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.29 Total: -59.31 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -1.35 Total: -22.38 kcal Atomic # 14 Polarization: 52.18 SS G_CDS: 2.05 Total: 54.23 kcal Total: -69.83 4.96 -64.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306250813.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.538 kcal (2) G-P(sol) polarization free energy of solvation -69.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds