Wall clock time and date at job start Mon Mar 30 2020 01:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47520 * 2 1 4 4 C 1.53001 * 109.47520 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.82250 * 59.10711 * 4 3 2 6 6 C 1.54380 * 109.83490 * 179.97438 * 4 3 2 7 7 C 1.55303 * 102.25289 * 140.86496 * 6 4 3 8 8 C 1.54941 * 100.94502 * 325.86964 * 7 6 4 9 9 H 1.09002 * 110.30812 * 277.52770 * 8 7 6 10 10 C 1.50702 * 110.30829 * 155.45712 * 8 7 6 11 11 H 1.07995 * 120.00230 * 1.39187 * 10 8 7 12 12 C 1.37882 * 119.99671 * 181.39203 * 10 8 7 13 13 N 1.31517 * 120.00023 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99762 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47322 * 59.99585 * 14 12 10 16 16 H 1.48504 * 109.46756 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47144 * 299.99428 * 14 12 10 18 18 O 1.43240 * 109.82747 * 298.13382 * 4 3 2 19 19 H 1.08999 * 109.47015 * 300.00990 * 1 2 3 20 20 H 1.08998 * 109.46235 * 60.00509 * 1 2 3 21 21 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47582 * 239.99490 * 2 1 3 23 23 H 1.09003 * 109.46922 * 119.99638 * 2 1 3 24 24 H 1.08999 * 109.47784 * 59.99481 * 3 2 1 25 25 H 1.09004 * 109.46587 * 299.99229 * 3 2 1 26 26 H 1.09002 * 109.47105 * 180.89019 * 5 4 3 27 27 H 1.08997 * 109.47342 * 300.88864 * 5 4 3 28 28 H 1.08994 * 109.47078 * 60.89057 * 5 4 3 29 29 H 1.09009 * 110.84476 * 22.67510 * 6 4 3 30 30 H 1.08995 * 110.84598 * 259.06180 * 6 4 3 31 31 H 1.08998 * 111.12625 * 207.94466 * 7 6 4 32 32 H 1.09008 * 111.15668 * 83.80585 * 7 6 4 33 33 H 0.96998 * 119.99537 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0895 0.7032 -1.2342 6 6 4.0939 2.8947 0.0000 7 6 5.3127 2.8058 0.9584 8 6 4.8139 1.7444 1.9710 9 1 4.1790 2.2098 2.7249 10 6 5.9837 1.0561 2.6260 11 1 6.9923 1.3500 2.3760 12 6 5.7660 0.0510 3.5445 13 7 4.5377 -0.3066 3.8493 14 14 7.2159 -0.8017 4.3569 15 1 8.0233 0.1969 5.1024 16 1 6.7175 -1.8367 5.2980 17 1 8.0594 -1.4431 3.3166 18 8 4.0555 0.8072 1.1892 19 1 -0.3633 0.5140 0.8899 20 1 -0.3632 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.6768 1.9564 0.8899 25 1 1.6769 1.9562 -0.8901 26 1 5.1793 0.6929 -1.2198 27 1 3.7164 -0.3209 -1.2283 28 1 3.7428 1.2110 -2.1341 29 1 3.3412 3.5787 0.3920 30 1 4.4078 3.1933 -1.0001 31 1 5.4968 3.7614 1.4495 32 1 6.2024 2.4595 0.4324 33 1 4.3846 -1.0134 4.4957 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306250814.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:43 Heat of formation + Delta-G solvation = -72.271611 kcal Electronic energy + Delta-G solvation = -13402.590079 eV Core-core repulsion = 11234.388089 eV Total energy + Delta-G solvation = -2168.201990 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.67945 -34.44066 -32.45621 -31.01648 -30.13685 -26.50507 -26.10207 -23.29587 -21.13585 -20.05097 -18.72044 -16.45208 -15.31751 -14.89777 -14.49141 -13.98317 -13.52878 -12.72179 -12.58671 -12.33527 -12.05506 -11.71845 -11.54137 -11.27892 -11.11407 -10.86074 -10.65572 -10.55714 -10.35330 -10.10840 -9.95373 -9.58935 -9.49612 -8.99151 -8.50544 -7.79302 -5.95141 -4.07776 3.34922 3.39342 3.41770 4.46351 4.99689 5.33716 5.47026 5.48641 5.62176 5.68141 5.76035 5.97034 5.99081 6.09435 6.20770 6.24281 6.31690 6.41228 6.47015 6.50336 6.65639 6.73085 6.74825 6.86189 6.93125 7.06763 7.12392 7.66692 7.94308 8.33997 8.73955 9.12096 9.62646 11.12216 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037138 B = 0.011468 C = 0.009736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.766358 B = 2440.955992 C = 2875.189339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.114 4.114 4 C 0.095 3.905 5 C -0.147 4.147 6 C -0.148 4.148 7 C -0.147 4.147 8 C 0.211 3.789 9 H 0.025 0.975 10 C -0.534 4.534 11 H 0.060 0.940 12 C 0.078 3.922 13 N -0.863 5.863 14 Si 0.890 3.110 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 O -0.346 6.346 19 H 0.050 0.950 20 H 0.044 0.956 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.029 2.974 -7.462 8.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.151 4.151 4 C 0.054 3.946 5 C -0.204 4.204 6 C -0.185 4.185 7 C -0.185 4.185 8 C 0.156 3.844 9 H 0.043 0.957 10 C -0.572 4.572 11 H 0.078 0.922 12 C -0.127 4.127 13 N -0.499 5.499 14 Si 0.717 3.283 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.201 1.201 18 O -0.266 6.266 19 H 0.069 0.931 20 H 0.063 0.937 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.097 0.903 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.188 2.641 -7.288 8.811 hybrid contribution 0.760 -0.263 0.363 0.883 sum -3.428 2.378 -6.925 8.085 Atomic orbital electron populations 1.21783 0.97127 1.00785 1.00922 1.21484 0.94161 0.97380 1.02862 1.21864 0.95765 0.96926 1.00588 1.21866 0.92323 0.91237 0.89175 1.22060 1.01305 1.00702 0.96333 1.23147 0.98622 0.97121 0.99649 1.23306 0.96977 1.00317 0.97896 1.20479 0.90094 0.85721 0.88108 0.95710 1.21084 0.91942 1.21004 1.23138 0.92153 1.25059 0.95457 0.96371 0.95847 1.70030 1.19315 1.28645 1.31933 0.86723 0.82944 0.79387 0.79260 1.20180 1.21218 1.20141 1.88836 1.70486 1.36773 1.30457 0.93064 0.93663 0.93389 0.92593 0.90349 0.92228 0.92988 0.92662 0.92370 0.93462 0.91936 0.92052 0.92279 0.91802 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.12 -2.12 5.44 -26.73 -0.15 -2.27 16 3 C -0.11 -2.04 4.36 -26.73 -0.12 -2.15 16 4 C 0.09 1.92 0.93 -89.89 -0.08 1.84 16 5 C -0.15 -2.65 8.38 37.16 0.31 -2.34 16 6 C -0.15 -2.74 6.09 -24.79 -0.15 -2.89 16 7 C -0.15 -3.14 6.53 -24.49 -0.16 -3.30 16 8 C 0.21 5.57 3.24 -26.86 -0.09 5.49 16 9 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 10 C -0.53 -15.30 8.80 -34.44 -0.30 -15.60 16 11 H 0.06 1.68 7.76 -52.49 -0.41 1.27 16 12 C 0.08 2.26 5.42 -17.82 -0.10 2.16 16 13 N -0.86 -25.99 12.99 55.43 0.72 -25.27 16 14 Si 0.89 21.72 29.54 -169.99 -5.02 16.69 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 O -0.35 -9.00 9.40 -35.23 -0.33 -9.33 16 19 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 20 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.92 6.42 -51.93 -0.33 0.59 16 23 H 0.08 1.64 7.75 -51.93 -0.40 1.24 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.05 6.40 -51.93 -0.33 0.72 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.09 7.85 -51.92 -0.41 0.68 16 30 H 0.06 0.99 7.82 -51.93 -0.41 0.58 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.36 8.04 -51.92 -0.42 0.95 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 265.99 15.07 4.01 4.01 Total: -1.00 -30.16 265.99 -6.73 -36.90 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.65 Total: -2.16 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -0.46 Total: -20.85 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.72 Total: -25.27 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.33 Total: -9.33 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.16 -6.73 -36.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306250814.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.374 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds